suba logo
AT2G38070.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF740)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF740); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF740) (TAIR:AT3G09070.1); Has 108 Blast hits to 106 proteins in 27 species: Archae - 0; Bacteria - 3; Metazoa - 6; Fungi - 2; Plants - 76; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIMYeggNOG:ENOG410YBGZEMBL:CP002685EnsemblPlants:AT2G38070
EnsemblPlants:AT2G38070.1entrez:818385GeneID:818385GO:GO:0005886
Gramene:AT2G38070.1hmmpanther:PTHR31659hmmpanther:PTHR31659:SF8InParanoid:F4IRZ1
InterPro:IPR008004iPTMnet:F4IRZ1KEGG:ath:AT2G38070OMA:VENNYEM
PaxDb:F4IRZ1Pfam:PF05340PRIDE:F4IRZ1Proteomes:UP000006548
RefSeq:NP_181342.1STRING:3702.AT2G38070.1TAIR:AT2G38070UniGene:At.37336
UniProt:F4IRZ1
Coordinates (TAIR10) chr2:+:15928737..15930596
Molecular Weight (calculated) 69182.50 Da
IEP (calculated) 9.13
GRAVY (calculated) -0.84
Length 619 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMNNPANNN PVAASSASAV ALAPPPHPPQ PHRPSTSCDR HPDERFTGFC PSCLFDRLSV LDITGKNNNA VASSSKKPPS SSAALKAIFK PSSSSGSFFP
101: ELRRTKSFSA SKAEAFSLGA FEPQRRSCDV RVRNTLWSLF HEDAEHNSQT KEGLSVNCSE IDLERINSIV KSPVFEEETE IESEQDNEKD IKFETFKEPR
201: SVIDEIVEEE EEEETKKVED FTMEFNPQTT AKKTNRDFKE IAGSFWSAAS VFSKKLQKWR QKQKLKKHRT GNLGAGSSAL PVEKAIGRQL RDTQSEIAEY
301: GYGRRSCDTD PRFSIDAGRF SLDAGRVSVD DPRYSFEEPR ASWDGYLIGR AAAPMRMPSM LSVVEDSPVR NHVHRSDTHI PVEKSPQVSE AVIDEIVPGG
401: SAQTREYYLD SSSSRRRKSL DRSSSTRKLS ASVMAEIDEL KLTQDREAKD LVSHSNSLRD DCCSVENNYE MGVRENVGTI ECNKKRTKKS RWSWNIFGLL
501: HRKNGNKYEE EERRSGVDRT FSGSWNVEPR NGFDPKMIRS NSSVSWRSSG TTGGGLQRNS VDGYISGKKK VSKAENGMLK FYLTPGKGRR RGSGNSTAPT
601: SRPVPASQPF GSRNVMNFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)