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AT3G27330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G40720.1); Has 9172 Blast hits to 9085 proteins in 2351 species: Archae - 0; Bacteria - 208; Metazoa - 7155; Fungi - 537; Plants - 665; Viruses - 17; Other Eukaryotes - 590 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0463eggNOG:ENOG410INBBEMBL:CP002686EnsemblPlants:AT3G27330
EnsemblPlants:AT3G27330.1entrez:822354Gene3D:3.30.40.10GeneID:822354
GO:GO:0008270GO:GO:0016021Gramene:AT3G27330.1hmmpanther:PTHR21461
hmmpanther:PTHR21461:SF10InParanoid:F4IWG7InterPro:IPR001841InterPro:IPR008166
InterPro:IPR013083InterPro:IPR017907InterPro:IPR018957InterPro:IPR029044
KEGG:ath:AT3G27330ncoils:CoilOMA:KDIMVINPaxDb:F4IWG7
Pfam:PF00097Pfam:PF01697Pfscan:PS50089PRIDE:F4IWG7
PROSITE:PS00518PROSITE:PS50089ProteinModelPortal:F4IWG7Proteomes:UP000006548
RefSeq:NP_189369.1scanprosite:PS00518SMART:SM00184SMR:F4IWG7
STRING:3702.AT3G27330.1SUPFAM:SSF53448SUPFAM:SSF57850TAIR:AT3G27330
TMHMM:TMhelixUniGene:At.5839UniProt:F4IWG7
Coordinates (TAIR10) chr3:-:10116950..10120516
Molecular Weight (calculated) 104147.00 Da
IEP (calculated) 9.98
GRAVY (calculated) -0.50
Length 913 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVRRKLGGG CGGDVVVSWR TFFWFVILFV FSFVLFSTMF IFKGKFRPVV RSTISFSTAV TARAVFRESI SSSPAVTIRE AVKLPEQTLV FLKYPQSRRL
101: FTKDDLICVF SGSSKLRKVY PTAVDRDKFG GQIVRCPETP RGYTISLAVS RWTTDDHLPA GPTHRYDWLV YDAVIDYDNS TVVFVKGLNL RPGRVADVSR
201: YECVYGWDFA KHNRLIRSDV ITAAQEIVRC RTPLAVLDGP KAARGPVKVS VRIKGGTGML PSIAQPVRII NPPRKKPFQM CVCTMTRNAA AVLREWVMYH
301: AGIGVQRWFI YDNNSDDDII AEIENLERRG YNISRHFWPW IKTQEAGFSN CAIRAKSDCD WIAFIDVDEF FYIPSGETLT SVIRNYTTTD SIGEIRTPCH
401: SFGPSGLRSR PRSGVTSGYT CRVVLPERHK SIIRPEAMNA TLINVVHHFH LRDGFTFADM DKDIMVINHY KYQVWEVFKE KFYRRVATYV ADWQNEENVG
501: SRDRAPGLGT RPVEPSDWAE RFCEVNDTGL RDQVFEKFKD KKTQRLVWEK AEEDDNIQRM VSETPLRVTN RSGDGSNGSK EVSIAREKNG ENAEIFISPR
601: FKSAAAMAGW DEEDLIIASF VVDDTPERSS SKRRRRSNLL FKSTPPSGSS RRNQRVKQSL VPLPVIDLDK VIRHEEEKSA EKKKKKREME TETKEEKKID
701: KDEKSLSDHV VLPCIDKLRD ELSCAICLEI CFEPSTTTCG HSFCKKCLRS AADKCGRKCP KCRQLIGNGR YCTVNTVLWN TIQLLFPKEV EAQRAASANL
801: KGKETPSPRN PNQRLRSRNR ETALFQERLQ REDISRLLVS EERSERSERR RRSTSMRLDQ NRDAALAMRL QRQEFASAFG ATTAETSSSS VSTLSRARAN
901: LQAMASRAVR RQG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)