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AT2G37100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : protamine P1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
protamine P1 family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: chromosome organization; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03110.1); Has 306 Blast hits to 290 proteins in 70 species: Archae - 0; Bacteria - 11; Metazoa - 127; Fungi - 26; Plants - 97; Viruses - 12; Other Eukaryotes - 33 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYGGeggNOG:ENOG410YYK6EMBL:AC006260EMBL:AK117466
EMBL:BT005142EMBL:CP002685EnsemblPlants:AT2G37100EnsemblPlants:AT2G37100.1
entrez:818286GeneID:818286Gramene:AT2G37100.1hmmpanther:PTHR33448
hmmpanther:PTHR33448:SF4HOGENOM:HOG000153179KEGG:ath:AT2G37100OMA:GWVKNAF
PhylomeDB:Q9ZQC7PIR:E84788Proteomes:UP000006548RefSeq:NP_181247.1
TAIR:AT2G37100UniGene:At.37467UniProt:Q9ZQC7
Coordinates (TAIR10) chr2:+:15591147..15592040
Molecular Weight (calculated) 33758.60 Da
IEP (calculated) 11.15
GRAVY (calculated) -1.08
Length 297 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFSSSRPVS SPGRTENPPL LMRFLRTKSR SRSRSRSRRP IFFRRKNASA AAETQEPTSP KVTCMGQVRI NRSKKPKPET ARVSGGATER RRQSRRCGWV
101: KNAFPCHSFT GIIKPTCFSP VWRKWKSFSH ASFSKKSEKR SSSSRSEPIF GRSTVEPEEP EETRKEENQE EEASSCKSFT ATPPRNAFLL TRCRSAPYRS
201: PSSANSLFED QEETNKAPFQ RHASSENVSV SEEPKTSVTE TTERLEDSRR ESAASEEPKR SVLGSPRQCL ILTRCNSEPA RLVPEMGYRQ NPRLGFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)