AT2G34170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF688) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF688); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF688) (TAIR:AT1G29240.1); Has 217 Blast hits to 194 proteins in 53 species: Archae - 0; Bacteria - 11; Metazoa - 92; Fungi - 12; Plants - 78; Viruses - 2; Other Eukaryotes - 22 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14428298..14430051 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58389.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.88 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||
| Length | 523 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEKQLNFDA PLLSTRRMKK SAISVRRNMP KQLTDESKTS ESLSVSVLVQ DMGLDQVPDS PLESKHVEEE AEESEDDDVF SDALDTLSLK QSISGGGGVE 101: AMKPSMPSED PQFMLDRFLP AAKSLTLEQP PQYSWKRQPL PLMSEPMRQI RDIVPAENRA TPTRYESSFT PSYYQDIDDE ESEEDSDDDE VSEYLSKRGC 201: GMMSPQICFK NSLGMLSSVN GLKEKPYSLR TPSHDQVKSS KVAQLKSRFQ SVKKLALDYK QKLGSIAQSP VHPSVGKKFN FGSEQHESKS SASRPSSPYR 301: QNGCMSPYRS VGNSSPLHAA GFPGTRKEAE VMRANRLNKH IRNISKSHES LYPKSTKQDC STSSAMEKTL YVDSENSPRT SNENRSSNVK KLPETISEEP 401: EMEGKKPKAV RELKAVETLS ISSGVKMMKA DELGKNNSGC DLSPLAPPPP KKPSESWLFS NLPSVSSKIP SPRYLFHPQK KNVEENSTSV TKWETIVKTS 501: YTHRDHIRYS EELVAHSSCQ SKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)