AT2G34810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAD-binding Berberine family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30720.1); Has 4560 Blast hits to 4463 proteins in 716 species: Archae - 40; Bacteria - 1976; Metazoa - 12; Fungi - 1639; Plants - 673; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14685292..14686914 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61310.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.12 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||
| Length | 540 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKFWSRPLTF LIIIIYLIIQ QVNSSPPSLS IPEHFLRCLD TQPSDHGSPN SRTAVIPTNS SFSTNLMNGV RNLRFASVST RKPEVIVAAV TETHIRATIS 101: CCKLLNLELR IRSGGHDYEG FSYTSPVPFV ILDMYNFNKI DINMKDETVW IQSGASLGQL YYNIASKSKV HAFPAGVCPK VGAGGHFSGG GFGNLMRKYG 201: LSIDHIIDAQ IMDANGKVYR NRQAMGEDVF WAIRGGGGGS YGVILAWKIK LVRVPEKVTV FKLERTVREG AVDLVHKWQQ VAPVIDRDLF IRLEIKPINR 301: KISKGKTIKV SFIGMFLGLP ERLLNITKQS FPELHLTKED CMVKKWIESS VFWANYPEKA PIELLLKRVS TNEYYWKRTS DFVQAPISKQ GLAKIFQTMI 401: DHSPLPRRVW MQWNPWGGKM AEIASDATAF VHRGGNVFMI EHFMNWYRPG DELEEKFLAI ARSFKEAMAP FVSKNPREAF FNYRDVDIGI TTPGYNATYE 501: GAKVYGDSYF KGNYLRLVKI KARFDRTNFF RSQQGIPVLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)