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AT2G23790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF607)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF607); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF607) (TAIR:AT4G36820.1); Has 364 Blast hits to 364 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 45; Plants - 131; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
BioGrid:2263eggNOG:ENOG410Y3YUeggNOG:KOG2966EMBL:AC004482
EMBL:AY145900EMBL:CP002685EnsemblPlants:AT2G23790EnsemblPlants:AT2G23790.1
entrez:816911GeneID:816911GO:GO:0005262GO:GO:0005743
GO:GO:0016021Gramene:AT2G23790.1hmmpanther:PTHR13462hmmpanther:PTHR13462:SF4
HOGENOM:HOG000239883InParanoid:O64823InterPro:IPR006769KEGG:ath:AT2G23790
OMA:ERRGFIPPaxDb:O64823Pfam:O64823Pfam:PF04678
PhylomeDB:O64823PIR:A84629PRIDE:O64823PRO:PR:O64823
ProteinModelPortal:O64823Proteomes:UP000006548RefSeq:NP_179959.1STRING:3702.AT2G23790.1
TAIR:AT2G23790TMHMM:TMhelixUniGene:At.44798UniGene:At.68917
UniProt:O64823
Coordinates (TAIR10) chr2:-:10125692..10127455
Molecular Weight (calculated) 38179.40 Da
IEP (calculated) 9.10
GRAVY (calculated) -0.28
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMRKLLSKK LFNITNVASQ SLMNCRISSS SLAVRTRVPN DSTDTTKIAP EPGDLAMSRR FMHNSAMIRP AEIMQMPVGE SLIEKLREID GSKDRIRLDG
101: LSPPERETSL TVADTKKLLR AAQIEIVKSK LRETGRSWMP YKEFVSVCGE ASSDPDLGSK IAKMLDDSAN VIVLGDSVCI RPDQVTKSIE GLLPLPKIHN
201: PNDPRRIEFK ELEAEKAVID VKAHTLVRKE LWAGLGYLIL QTAGFMRLTF WELSWDVMEP ICFYVTSVYF MAGYAFFLRT SKEPSFEGFY QSRFEAKQRK
301: LMNEYEFDLE RYNELKKLFC SKPSDHVSKI LGAIKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)