AT5G13760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.666 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plasma-membrane choline transporter family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plasma-membrane choline transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT3G04440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4442102..4444565 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63815.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.18 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.20 | ||||||||||||||||||||||||||||
| Length | 569 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGATEPAVVE RERKEKSEKQ REVKAVEEGG GEEESKDKDE ISHHRFLASL NRLNPTNPLR IIVNGGSRFT TPPPPNLAQP LRSSSRQPPP PPPRPQTPPT 101: FVPEETQPQT PPPPNQHQTR SIFTPTPQQT LASLNSTKYT NKFFLLLFIF HKVVAIGFVG FLVFRGVQGL IGSNGSVKRK EKKILRFLLP QVEAASLLSI 201: ILAFLWQMAF RIWPDFMIHF ILWSTFLMSL SSGILLLCFQ MPATDAVGVC LIAFSIGNGL YACWVTRRIK FCSKILVKSL EPVSKFSDLN LPTYYMLAAG 301: FLWMSMWIFG VIGALNFYFP PLVIIGLVLS LAWTTEVMRN IVNLTVSRVI ALYYLRGMQS STRFSFQRAL SRNLGSACLG SLFVPTIEAL RILARGLNLL 401: KGEDEFMFCC ANCCLRLMDF IFEHGNGWAF VQIAAYGKGF VRASQDTWKL FEDEDMVEIV DADITSSICF LTGICSGCVC LIVAAAWTHT VYKPFTATIS 501: LLAFFIGYLM TRISMALPHA CVGCYYTCYA ENPESRFFED KVIKTRQDMI KSGRVAVTST TPRVRRALA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)