AT4G31240.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.949 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : protein kinase C-like zinc finger protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
protein kinase C-like zinc finger protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G60420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:15176637..15177986 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 44965.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 392 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAVSADYQVK FPESGDLYSI LAAEGIEFLL SHSGEVPLEY IHGKTICLFF SAIWCRPCKD FTPELIKLYE NLQNRGEELE IIFVSFDHDM TSFYEHFWCM 101: PWLAVPFNLS LLNKLRDKYG ISRIPSLVPL YSDEISVAED VIGLIEDYGS EAFPFTKKRK EELKAIDDSK RLGGQLEKLL THESRNYVVA RNGSKVLVSK 201: LVGKTIGLYF GAHWCPPFRS FTSQLVDVYN ELATTDKGSF EVILISTDRD SREFNINMTN MPWLAIPYED RTRQDLCRIF NVKLIPALVI IGPEEKTVTT 301: NAREMVSLYG SRSFPFTESR IVELKACLKK EGDSLPRKVK DNKHEHELKL DMAKAYVCDF CKKQGRFWAF SCNACDYDLH PTCVEEEEAL LV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)