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AT1G63240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 460 Blast hits to 413 proteins in 106 species: Archae - 5; Bacteria - 12; Metazoa - 152; Fungi - 46; Plants - 43; Viruses - 2; Other Eukaryotes - 200 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVZ4eggNOG:ENOG41105F4EMBL:AY050816EMBL:AY114080
EMBL:CP002684EnsemblPlants:AT1G63240EnsemblPlants:AT1G63240.1entrez:842629
GeneID:842629Gramene:AT1G63240.1HOGENOM:HOG000151171KEGG:ath:AT1G63240
OMA:WLPVGWIProteomes:UP000006548RefSeq:NP_564812.1TAIR:AT1G63240
UniGene:At.26561UniProt:Q949Y1
Coordinates (TAIR10) chr1:-:23456188..23458550
Molecular Weight (calculated) 60921.80 Da
IEP (calculated) 4.79
GRAVY (calculated) -0.86
Length 548 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRQLPPTIT ADATPDWLPV GWIAHSTVLK RGRQTRTYTQ LRTGKKLSTK DQVLEYIKME KIREKREAGI KRNKASLKAL QDKETASERP SWLPDERKAE
101: LEIGYVGGNP YKMNVNTSND FNTNPKETVV LDENSMESED SSGEVYETGC NEITYAIEED EEDFSEREYV ENVENFSNIT STPLRSQPER MQKLESRAKT
201: QCVFEDEDLS SDSDNKLPEA ETSKEGNGLG EGHVVSNLVE SFEKKTSHGV MVECDDKARE IPGLTGSLTV EINLDCEPAS DSLVEKNWNK SESDETGTRN
301: IEIIDLESDV IHISGSSKAV EVTQESGDTS KEPLKAQEEP DNDWRSSVFF PDREAPSHSV LVFESSNARP SVEDLSNTIE LGLTPQEKNI SSSKKRKKNT
401: ERCASKNIKK KGIEAPSRKL QRGKTPSSKS HGKKGSSSVG MDKKPDDWLK PCPNFPFEPL TRSFQVEDDS AIRMYLEQHF AAPGSADSNL PLPDFGLPTF
501: SDIKISLNEE PAFKKKKSPD PPCVQVASSN IPSCSSMGTS MLPTVAGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)