AT1G63150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.968 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Transacting siRNA generating locus. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62910.1); Has 64382 Blast hits to 15012 proteins in 312 species: Archae - 5; Bacteria - 60; Metazoa - 1057; Fungi - 1283; Plants - 59548; Viruses - 0; Other Eukaryotes - 2429 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23419399..23421288 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70794.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.32 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 629 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE 101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL 201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALNLLNKME AARIKANVVI FNTIIDSLCK YRHVEVAVDL FTEMETKGIR PNVVTYNSLI 301: NCLCNYGRWS DASRLLSNML EKKINPNVVT FNALIDAFFK EGKLVEAEKL HEEMIQRSID PDTITYNLLI NGFCMHNRLD EAKQMFKFMV SKDCLPNIQT 401: YNTLINGFCK CKRVEDGVEL FREMSQRGLV GNTVTYTTII QGFFQAGDCD SAQMVFKQMV SNRVPTDIMT YSILLHGLCS YGKLDTALVI FKYLQKSEME 501: LNIFIYNTMI EGMCKAGKVG EAWDLFCSLS IKPDVVTYNT MISGLCSKRL LQEADDLFRK MKEDGTLPNS GTYNTLIRAN LRDCDRAASA ELIKEMRSSG 601: FVGDASTISL VTNMLHDGRL DKSFLNMLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)