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AT1G62930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G63130.1); Has 70585 Blast hits to 15409 proteins in 318 species: Archae - 8; Bacteria - 85; Metazoa - 1384; Fungi - 1397; Plants - 64906; Viruses - 0; Other Eukaryotes - 2805 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC011000EMBL:AY056104
EMBL:CP002684EnsemblPlants:AT1G62930EnsemblPlants:AT1G62930.1entrez:842594
Gene3D:1.25.40.10GeneID:842594Genevisible:Q9LQ14GO:GO:0005739
GO:GO:0006397GO:GO:0009507Gramene:AT1G62930.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF884HOGENOM:HOG000015176InParanoid:Q9LQ14InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT1G62930OMA:RTYNTMIPaxDb:Q9LQ14
Pfam:PF12854Pfam:PF13041Pfam:PF13812Pfam:Q9LQ14
Pfscan:PS51375PhylomeDB:Q9LQ14PIR:H96653PRIDE:Q9LQ14
PRO:PR:Q9LQ14PROSITE:PS51375ProteinModelPortal:Q9LQ14Proteomes:UP000006548
RefSeq:NP_176481.2SMR:Q9LQ14STRING:3702.AT1G62930.1SUPFAM:SSF48452
TAIR:AT1G62930TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.70258
UniProt:Q9LQ14
Coordinates (TAIR10) chr1:+:23306534..23308423
Molecular Weight (calculated) 70927.00 Da
IEP (calculated) 7.93
GRAVY (calculated) -0.01
Length 629 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSCVHLGIV ASQSKKMSLA KRFAQLRKAS PLFSLRGVYF SAASYDYREK LSRNVLLDLK LDDAVDLFGE MVQSRPLPSI VEFNKLLSAI AKMNKFDLVI
101: SLGERMQNLR ISYDLYSYNI LINCFCRRSQ LPLALAVLGK MMKLGYEPDI VTLSSLLNGY CHGKRISEAV ALVDQMFVME YQPNTVTFNT LIHGLFLHNK
201: ASEAVALIDR MVARGCQPDL FTYGTVVNGL CKRGDIDLAL SLLKKMEKGK IEADVVIYTT IIDALCNYKN VNDALNLFTE MDNKGIRPNV VTYNSLIRCL
301: CNYGRWSDAS RLLSDMIERK INPNVVTFSA LIDAFVKEGK LVEAEKLYDE MIKRSIDPDI FTYSSLINGF CMHDRLDEAK HMFELMISKD CFPNVVTYNT
401: LIKGFCKAKR VEEGMELFRE MSQRGLVGNT VTYNTLIQGL FQAGDCDMAQ KIFKKMVSDG VPPDIITYSI LLDGLCKYGK LEKALVVFEY LQKSKMEPDI
501: YTYNIMIEGM CKAGKVEDGW DLFCSLSLKG VKPNVIIYTT MISGFCRKGL KEEADALFRE MKEDGTLPNS GTYNTLIRAR LRDGDKAASA ELIKEMRSCG
601: FVGDASTISM VINMLHDGRL EKSYLEMLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)