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AT1G62670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : rna processing factor 2
Curator
Summary (TAIR10)
Encodes a pentatricopeptide repeat protein required for 5' end processing of nad9 and cox3 mRNAs in mitochondria.
Computational
Description (TAIR10)
rna processing factor 2 (RPF2); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G62930.1); Has 71790 Blast hits to 15506 proteins in 316 species: Archae - 6; Bacteria - 84; Metazoa - 1433; Fungi - 1460; Plants - 65974; Viruses - 0; Other Eukaryotes - 2833 (source: NCBI BLink).
Protein Annotations
BioGrid:27785eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC005698
EMBL:AC007190EMBL:CP002684EnsemblPlants:AT1G62670EnsemblPlants:AT1G62670.1
entrez:842564Gene3D:1.25.40.10GeneID:842564Genevisible:Q9SXD1
GO:GO:0000966GO:GO:0003723GO:GO:0005739Gramene:AT1G62670.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF884HOGENOM:HOG000015176InParanoid:Q9SXD1
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G62670OMA:CTANSRT
PaxDb:Q9SXD1Pfam:PF12854Pfam:PF13041Pfam:Q9SXD1
Pfscan:PS51375PhylomeDB:Q9SXD1PRIDE:Q9SXD1PRO:PR:Q9SXD1
PROSITE:PS51375ProteinModelPortal:Q9SXD1Proteomes:UP000006548RefSeq:NP_176454.1
SMR:Q9SXD1STRING:3702.AT1G62670.1SUPFAM:SSF81901TAIR:AT1G62670
tair10-symbols:RPF2TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65045
UniProt:Q9SXD1
Coordinates (TAIR10) chr1:-:23204773..23206665
Molecular Weight (calculated) 70850.40 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.07
Length 630 amino acids
Sequence (TAIR10)
(BLAST)
001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)