suba logo
AT1G12775.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC012187EMBL:CP002684
EnsemblPlants:AT1G12775EnsemblPlants:AT1G12775.1entrez:3766712Gene3D:1.25.40.10
GeneID:3766712Genevisible:Q9LPX2GO:GO:0005739Gramene:AT1G12775.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF416HOGENOM:HOG000015176InParanoid:Q9LPX2
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G12775ncoils:Coil
OMA:ARRIECAPaxDb:Q9LPX2Pfam:PF01535Pfam:PF12854
Pfam:PF13041Pfam:PF13812Pfam:Q9LPX2Pfscan:PS51375
PhylomeDB:Q9LPX2PIR:A86261PRIDE:Q9LPX2PRO:PR:Q9LPX2
PROSITE:PS51375ProteinModelPortal:Q9LPX2Proteomes:UP000006548RefSeq:NP_001031033.1
SMR:Q9LPX2STRING:3702.AT1G12775.1TAIR:AT1G12775TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.20506UniGene:At.27284UniProt:Q9LPX2
Coordinates (TAIR10) chr1:+:4353906..4355840
Molecular Weight (calculated) 72329.00 Da
IEP (calculated) 6.39
GRAVY (calculated) 0.02
Length 644 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRMMIRRLS SQASRFVQPR LLETGTLRIA LINCPNELLF CCERGFSTFS DRNLSYRDKL SSGLVGIKAD DAVDLFRDMI QSRPLPTVID FNRLFSAIAK
101: TKQYELVLAL CKQMESKGIA HSIYTLSIMI NCFCRCRKLS YAFSTMGKIM KLGYEPDTVI FNTLLNGLCL ECRVSEALEL VDRMVEMGHK PTLITLNTLV
201: NGLCLNGKVS DAVVLIDRMV ETGFQPNEVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKDGSLD NAFNLFNEME IKGFKADIIT
301: YNTLIGGFCN AGRWDDGAKL LRDMIKRKIS PNVVTFSVLI DSFVKEGKLR EADQLLKEMM QRGIAPNTIT YNSLIDGFCK ENRLEEAIQM VDLMISKGCD
401: PDIMTFNILI NGYCKANRID DGLELFREMS LRGVIANTVT YNTLVQGFCQ SGKLEVAKKL FQEMVSRRVR PDIVSYKILL DGLCDNGELE KALEIFGKIE
501: KSKMELDIGI YMIIIHGMCN ASKVDDAWDL FCSLPLKGVK LDARAYNIMI SELCRKDSLS KADILFRKMT EEGHAPDELT YNILIRAHLG DDDATTAAEL
601: IEEMKSSGFP ADVSTVKMVI NMLSSGELDK SFLDMLSTTR ASLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)