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AT4G01030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pentatricopeptide (PPR) repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G20230.1); Has 44944 Blast hits to 14972 proteins in 296 species: Archae - 1; Bacteria - 32; Metazoa - 191; Fungi - 174; Plants - 43677; Viruses - 0; Other Eukaryotes - 869 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL080237EMBL:AL161491
EMBL:CP002687EnsemblPlants:AT4G01030EnsemblPlants:AT4G01030.1entrez:827926
Gene3D:1.25.40.10GeneID:827926Genevisible:Q9SV26GO:GO:0005739
GO:GO:0008270Gramene:AT4G01030.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF107
HOGENOM:HOG000237570InParanoid:Q9SV26InterPro:IPR002885InterPro:IPR011990
InterPro:IPR032867KEGG:ath:AT4G01030OMA:WSWIQIEPaxDb:Q9SV26
Pfam:PF01535Pfam:PF13041Pfam:PF14432Pfam:Q9SV26
Pfscan:PS51375PhylomeDB:Q9SV26PIR:T10543PRIDE:Q9SV26
PRO:PR:Q9SV26PROSITE:PS51375ProteinModelPortal:Q9SV26Proteomes:UP000006548
RefSeq:NP_192012.2SMR:Q9SV26STRING:3702.AT4G01030.1TAIR:AT4G01030
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.19744UniGene:At.75231
UniProt:Q9SV26
Coordinates (TAIR10) chr4:-:448336..450642
Molecular Weight (calculated) 86335.10 Da
IEP (calculated) 8.24
GRAVY (calculated) -0.09
Length 768 amino acids
Sequence (TAIR10)
(BLAST)
001: MYRFLGLTIH GGLIKRGLDN SDTRVVSASM GFYGRCVSLG FANKLFDEMP KRDDLAWNEI VMVNLRSGNW EKAVELFREM QFSGAKAYDS TMVKLLQVCS
101: NKEGFAEGRQ IHGYVLRLGL ESNVSMCNSL IVMYSRNGKL ELSRKVFNSM KDRNLSSWNS ILSSYTKLGY VDDAIGLLDE MEICGLKPDI VTWNSLLSGY
201: ASKGLSKDAI AVLKRMQIAG LKPSTSSISS LLQAVAEPGH LKLGKAIHGY ILRNQLWYDV YVETTLIDMY IKTGYLPYAR MVFDMMDAKN IVAWNSLVSG
301: LSYACLLKDA EALMIRMEKE GIKPDAITWN SLASGYATLG KPEKALDVIG KMKEKGVAPN VVSWTAIFSG CSKNGNFRNA LKVFIKMQEE GVGPNAATMS
401: TLLKILGCLS LLHSGKEVHG FCLRKNLICD AYVATALVDM YGKSGDLQSA IEIFWGIKNK SLASWNCMLM GYAMFGRGEE GIAAFSVMLE AGMEPDAITF
501: TSVLSVCKNS GLVQEGWKYF DLMRSRYGII PTIEHCSCMV DLLGRSGYLD EAWDFIQTMS LKPDATIWGA FLSSCKIHRD LELAEIAWKR LQVLEPHNSA
601: NYMMMINLYS NLNRWEDVER IRNLMRNNRV RVQDLWSWIQ IDQTVHIFYA EGKTHPDEGD IYFELYKLVS EMKKSGYVPD TSCIHQDISD SEKEKLLMGH
701: TEKLAMTYGL IKKKGLAPIR VVKNTNICSD SHTVAKYMSV LRNREIVLQE GARVHHFRDG KCSCNDSW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)