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AT1G59720.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At1g59720-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At1g59720-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.
Computational
Description (TAIR10)
CHLORORESPIRATORY REDUCTION28 (CRR28); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1); Has 31527 Blast hits to 13136 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 37; Plants - 31097; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).
Protein Annotations
BioGrid:27488eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC007258
EMBL:AC009317EMBL:AK228565EMBL:CP002684EnsemblPlants:AT1G59720
EnsemblPlants:AT1G59720.1entrez:842263Gene3D:1.25.40.10GeneID:842263
Genevisible:Q0WQW5GO:GO:0004519GO:GO:0005739GO:GO:0006397
GO:GO:0008270GO:GO:0009507GO:GO:0016556GO:GO:0090305
Gramene:AT1G59720.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF561HOGENOM:HOG000237569
InParanoid:Q0WQW5InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867
KEGG:ath:AT1G59720OMA:LYSRILHPaxDb:Q0WQW5Pfam:PF01535
Pfam:PF13041Pfam:PF14432Pfam:Q0WQW5Pfscan:PS51375
PhylomeDB:Q0WQW5PIR:H96620PRIDE:Q0WQW5PRO:PR:Q0WQW5
PROSITE:PS51375ProteinModelPortal:Q0WQW5Proteomes:UP000006548RefSeq:NP_176180.1
SMR:Q0WQW5STRING:3702.AT1G59720.1SUPFAM:SSF48452TAIR:AT1G59720
tair10-symbols:CRR28TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.11368
UniGene:At.66916UniProt:Q0WQW5
Coordinates (TAIR10) chr1:-:21939868..21941784
Molecular Weight (calculated) 71963.70 Da
IEP (calculated) 7.28
GRAVY (calculated) -0.13
Length 638 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVRSIIVSP PTTITYYHPM SIGLLVHPLS PHIPPASSPS ASTAGNHHQR IFSLAETCSD MSQLKQLHAF TLRTTYPEEP ATLFLYGKIL QLSSSFSDVN
101: YAFRVFDSIE NHSSFMWNTL IRACAHDVSR KEEAFMLYRK MLERGESSPD KHTFPFVLKA CAYIFGFSEG KQVHCQIVKH GFGGDVYVNN GLIHLYGSCG
201: CLDLARKVFD EMPERSLVSW NSMIDALVRF GEYDSALQLF REMQRSFEPD GYTMQSVLSA CAGLGSLSLG TWAHAFLLRK CDVDVAMDVL VKNSLIEMYC
301: KCGSLRMAEQ VFQGMQKRDL ASWNAMILGF ATHGRAEEAM NFFDRMVDKR ENVRPNSVTF VGLLIACNHR GFVNKGRQYF DMMVRDYCIE PALEHYGCIV
401: DLIARAGYIT EAIDMVMSMP MKPDAVIWRS LLDACCKKGA SVELSEEIAR NIIGTKEDNE SSNGNCSGAY VLLSRVYASA SRWNDVGIVR KLMSEHGIRK
501: EPGCSSIEIN GISHEFFAGD TSHPQTKQIY QQLKVIDDRL RSIGYLPDRS QAPLVDATND GSKEYSLRLH SERLAIAFGL INLPPQTPIR IFKNLRVCND
601: CHEVTKLISK VFNTEIIVRD RVRFHHFKDG SCSCLDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)