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AT1G60740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.800
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740); BEST Arabidopsis thaliana protein match is: thioredoxin-dependent peroxidase 2 (TAIR:AT1G65970.1); Has 4009 Blast hits to 4009 proteins in 876 species: Archae - 11; Bacteria - 1529; Metazoa - 175; Fungi - 308; Plants - 243; Viruses - 0; Other Eukaryotes - 1743 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G60740-MONOMEREC:1.11.1.15eggNOG:COG0678eggNOG:KOG0541
EMBL:AC002292EMBL:AK176203EMBL:AY085779EMBL:CP002684
EnsemblPlants:AT1G60740EnsemblPlants:AT1G60740.1entrez:842368ExpressionAtlas:O22711
Gene3D:3.40.30.10GeneID:842368Genevisible:O22711GO:GO:0004601
GO:GO:0005737GO:GO:0005886GO:GO:0016491GO:GO:0051920
Gramene:AT1G60740.1hmmpanther:PTHR10430HOGENOM:HOG000255884InParanoid:O22711
InterPro:IPR012336InterPro:IPR013740KEGG:ath:AT1G60740KO:K03386
OMA:KFNTHEEPaxDb:O22711PeroxiBase:4355Pfam:O22711
Pfam:PF08534Pfscan:PS51352PhylomeDB:O22711PIR:G96632
PRIDE:O22711PRO:PR:O22711PROSITE:PS51352ProteinModelPortal:O22711
Proteomes:UP000006548RefSeq:NP_564763.1SMR:O22711STRING:3702.AT1G60740.1
SUPFAM:SSF52833TAIR:AT1G60740UniGene:At.48325UniProt:B4G289
UniProt:O22711
Coordinates (TAIR10) chr1:+:22361127..22361817
Molecular Weight (calculated) 17473.00 Da
IEP (calculated) 5.23
GRAVY (calculated) 0.07
Length 162 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPITVGDVV PDGTISFFDE NDQLQTVSVH SIAAGKKVIL FGVPGAFTPT CSMSHVPGFI GKAEELKSKG IDEIICFSVN DPFVMKAWGK TYQENKHVKF
101: VADGSGEYTH LLGLELDLKD KGLGIRSRRF ALLLDNLKVT VANVENGGEF TVSSAEDILK AL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)