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AT5G47000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, xylan 1,4-beta-xylosidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT4G17690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G47000-MONOMERBioGrid:19994EC:1.11.1.7eggNOG:ENOG410IH5P
eggNOG:ENOG410YA7MEMBL:AB013394EMBL:AY088108EMBL:AY093131
EMBL:BT008821EMBL:CP002688EnsemblPlants:AT5G47000EnsemblPlants:AT5G47000.1
entrez:834746GeneID:834746Genevisible:Q9FJR1GO:GO:0004601
GO:GO:0005576GO:GO:0006979GO:GO:0009044GO:GO:0020037
GO:GO:0042744GO:GO:0046872Gramene:AT5G47000.1hmmpanther:PTHR31517
hmmpanther:PTHR31517:SF11HOGENOM:HOG000237556InParanoid:Q9FJR1InterPro:IPR000823
InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793InterPro:IPR019794
KEGG:00940+1.11.1.7KEGG:ath:AT5G47000KO:K00430OMA:VVQSKQM
PaxDb:Q9FJR1PeroxiBase:231Pfam:PF00141Pfam:Q9FJR1
Pfscan:PS50873PhylomeDB:Q9FJR1PRIDE:Q9FJR1PRINTS:PR00458
PRINTS:PR00461PRO:PR:Q9FJR1PROSITE:PS00435PROSITE:PS00436
PROSITE:PS50873ProteinModelPortal:Q9FJR1Proteomes:UP000006548RefSeq:NP_568674.1
scanprosite:PS00435scanprosite:PS00436SMR:Q9FJR1STRING:3702.AT5G47000.1
SUPFAM:SSF48113TAIR:AT5G47000TMHMM:TMhelixUniGene:At.29916
UniGene:At.74143UniProt:Q9FJR1
Coordinates (TAIR10) chr5:-:19069171..19070175
Molecular Weight (calculated) 37016.30 Da
IEP (calculated) 7.21
GRAVY (calculated) -0.17
Length 334 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNMQFSRGF NPFVILFCLA VVAPIISADV AILRTDYYQK TCPDFHKIVR EAVTTKQVQQ PTTAAGTLRL FFHDCFLEGC DASVLIATNS FNKAERDDDL
101: NDSLPGDAFD IVTRIKTALE LSCPGVVSCA DILAQATRDL VTMVGGPYFD VKLGRKDGFE SKAHKVRGNV PMANQTVPDI HGIFKKNGFS LREMVALSGA
201: HTIGFSHCKE FSDRLYGSRA DKEINPRFAA ALKDLCKNHT VDDTIAAFND VMTPGKFDNM YFKNLKRGLG LLASDHILIK DNSTKPFVDL YATNETAFFE
301: DFARAMEKLG TVGVKGDKDG EVRRRCDHFN NLNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)