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AT2G16730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyl hydrolase family 35 protein
Curator
Summary (TAIR10)
putative beta-galactosidase (BGAL13 gene)
Computational
Description (TAIR10)
glycosyl hydrolase family 35 protein; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 11 (TAIR:AT4G35010.1); Has 2592 Blast hits to 2188 proteins in 502 species: Archae - 15; Bacteria - 1202; Metazoa - 413; Fungi - 220; Plants - 636; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G16730-MONOMERCAZy:GH35EC:3.2.1.23eggNOG:COG1874
eggNOG:KOG0496EMBL:AC005825EMBL:AJ270309EMBL:CP002685
EnsemblPlants:AT2G16730EnsemblPlants:AT2G16730.1entrez:816174Gene3D:2.60.120.260
Gene3D:3.20.20.80GeneID:816174Genevisible:Q9SCU9GO:GO:0004565
GO:GO:0005618GO:GO:0005975GO:GO:0030246GO:GO:0048046
Gramene:AT2G16730.1hmmpanther:PTHR23421hmmpanther:PTHR23421:SF52HOGENOM:HOG000239919
InParanoid:Q9SCU9InterPro:IPR000922InterPro:IPR001944InterPro:IPR008979
InterPro:IPR013781InterPro:IPR017853InterPro:IPR019801InterPro:IPR031330
KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23
KEGG:00604+3.2.1.23KEGG:ath:AT2G16730OMA:EYQHLEAPANTHER:PTHR23421
PaxDb:Q9SCU9Pfam:PF01301Pfam:PF02140Pfam:PF02837
Pfam:Q9SCU9Pfscan:PS50228PhylomeDB:Q9SCU9PIR:E84543
PRIDE:Q9SCU9PRINTS:PR00742PRO:PR:Q9SCU9PROSITE:PS01182
PROSITE:PS50228ProteinModelPortal:Q9SCU9Proteomes:UP000006548RefSeq:NP_179264.2
scanprosite:PS01182SMR:Q9SCU9STRING:3702.AT2G16730.1SUPFAM:SSF49785
SUPFAM:SSF51445TAIR:AT2G16730tair10-symbols:BGAL13TMHMM:TMhelix
UniGene:At.707UniProt:Q9SCU9
Coordinates (TAIR10) chr2:-:7261986..7266105
Molecular Weight (calculated) 95905.30 Da
IEP (calculated) 8.92
GRAVY (calculated) -0.55
Length 848 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIHSSDHSW LLLAVLVILL SFSGALSSDD KEKKTKSVDK KKEVTYDGTS LIINGNRELL YSGSIHYPRS TPEMWPNIIK RAKQGGLNTI QTYVFWNVHE
101: PEQGKFNFSG RADLVKFIKL IEKNGLYVTL RLGPFIQAEW THGGLPYWLR EVPGIFFRTD NEPFKEHTER YVKVVLDMMK EEKLFASQGG PIILGQIENE
201: YSAVQRAYKE DGLNYIKWAS KLVHSMDLGI PWVMCKQNDA PDPMINACNG RHCGDTFPGP NKDNKPSLWT ENWTTQFRVF GDPPAQRSVE DIAYSVARFF
301: SKNGTHVNYY MYHGGTNFGR TSAHYVTTRY YDDAPLDEFG LEREPKYGHL KHLHNALNLC KKALLWGQPR VEKPSNETEI RYYEQPGTKV CAAFLANNNT
401: EAAEKIKFRG KEYLIPHRSI SILPDCKTVV YNTGEIISHH TSRNFMKSKK ANKNFDFKVF TESVPSKIKG DSFIPVELYG LTKDESDYGW YTTSFKIDDN
501: DLSKKKGGKP NLRIASLGHA LHVWLNGEYL GNGHGSHEEK SFVFQKPVTL KEGENHLTML GVLTGFPDSG SYMEHRYTGP RSVSILGLGS GTLDLTEENK
601: WGNKVGMEGE RLGIHAEEGL KKVKWEKASG KEPGMTWYQT YFDAPESQSA AAIRMNGMGK GLIWVNGEGV GRYWMSFLSP LGQPTQIEYH IPRSFLKPKK
701: NLLVIFEEEP NVKPELIDFV IVNRDTVCSY IGENYTPSVR HWTRKNDQVQ AITDDVHLTA NLKCSGTKKI SAVEFASFGN PNGTCGNFTL GSCNAPVSKK
801: VVEKYCLGKA ECVIPVNKST FEQDKKDSCP KVEKKLAVQV KCGRDKKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)