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AT4G04930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25837856 (2015): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : fatty acid desaturase family protein
Curator
Summary (TAIR10)
Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues.
Computational
Description (TAIR10)
DES-1-LIKE; FUNCTIONS IN: oxidoreductase activity, sphingolipid delta-4 desaturase activity; INVOLVED IN: sphingolipid biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sphingolipid delta4-desaturase, N-terminal (InterPro:IPR013866), Fatty acid desaturase, type 1 (InterPro:IPR005804), Sphingolipid delta4-desaturase (InterPro:IPR011388); Has 703 Blast hits to 697 proteins in 257 species: Archae - 0; Bacteria - 174; Metazoa - 227; Fungi - 120; Plants - 36; Viruses - 3; Other Eukaryotes - 143 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G04930-MONOMERBioCyc:MetaCyc:AT4G04930-MONOMEREC:1.14.19.17eggNOG:ENOG410XQVT
eggNOG:KOG2987EMBL:AF128393EMBL:AF220201EMBL:AK221700
EMBL:AL161502EMBL:CP002687EnsemblPlants:AT4G04930EnsemblPlants:AT4G04930.1
entrez:825832GeneID:825832Genevisible:Q9ZPH4GO:GO:0005789
GO:GO:0016021GO:GO:0030148GO:GO:0042284Gramene:AT4G04930.1
gramene_pathway:1.14.-.-gramene_pathway:2.1.1.-gramene_pathway:PWY-5129hmmpanther:PTHR12879
hmmpanther:PTHR12879:SF8HOGENOM:HOG000188299InParanoid:Q9ZPH4InterPro:IPR005804
InterPro:IPR011388InterPro:IPR013866KEGG:ath:AT4G04930KO:K04712
OMA:HEACHCLPaxDb:Q9ZPH4Pfam:PF00487Pfam:PF08557
Pfam:Q9ZPH4PhylomeDB:Q9ZPH4PIR:A85062PIRSF:PIRSF017228
PRIDE:Q9ZPH4PRO:PR:Q9ZPH4ProteinModelPortal:Q9ZPH4Proteomes:UP000006548
Reactome:R-ATH-1660661RefSeq:NP_192402.1SMART:SM01269STRING:3702.AT4G04930.1
TAIR:AT4G04930tair10-symbols:DES-1-LIKETMHMM:TMhelixUniGene:At.4051
UniGene:At.4052UniProt:Q9ZPH4
Coordinates (TAIR10) chr4:+:2509236..2510918
Molecular Weight (calculated) 38509.50 Da
IEP (calculated) 7.87
GRAVY (calculated) 0.00
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKGGREKIS SNEEEREGVM ATDFFWSYTD EPHASRRRQI LSCYPQIRQL FGPDPWAFLK ITLVVILQLS TAAILHNSGW LKILSIAYFF GSFLNHNLFL
101: AIHELSHNLA FSTPVYNRCL GIFANLPIGV PMSVTFQKYH LEHHRFQGVD GIDMDVPTYT EAHLVTNIFA KTIWVFLQLF FYALRPIFIK PKPPGYWEFI
201: NFLIQIVLDV SVVLFFGWRS FAYLILSTFV GGGMHPMAGH FISEHYVFNP NQETYSYYGP LNLLTWSVGY HNEHHDFPRI PGNKLHLVKE IAGEYYEGLE
301: SYKSWSQVIY MYIMDTTVGP YSRMKRKLSK SD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)