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AT1G60560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.566
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SWIM zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SWIM zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 86 Blast hits to 86 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IU26eggNOG:ENOG410ZSRCEMBL:AY075639EMBL:BT002624
EMBL:CP002684EnsemblPlants:AT1G60560EnsemblPlants:AT1G60560.1entrez:842351
ExpressionAtlas:Q8RY56GeneID:842351GO:GO:0008270Gramene:AT1G60560.1
hmmpanther:PTHR33977hmmpanther:PTHR33977:SF2HOGENOM:HOG000084487InterPro:IPR007527
KEGG:ath:AT1G60560OMA:RMYWCSFPfam:PF04434Pfscan:PS50966
PhylomeDB:Q8RY56PROSITE:PS50966Proteomes:UP000006548RefSeq:NP_176256.2
TAIR:AT1G60560UniGene:At.44138UniProt:Q8RY56
Coordinates (TAIR10) chr1:-:22308791..22311277
Molecular Weight (calculated) 80982.20 Da
IEP (calculated) 8.02
GRAVY (calculated) -0.36
Length 703 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIVESLEEI PVQNPQVEDF SWADLTWTKF GTSEHHDQVA LVPYARVDEF IIGECSNAEC PTRFHIERGR KRSRGSLKEY KSDEYLEYRL YWCSFGPENY
101: GEGGGVLPSR KYRLNTRNRA ARPQSMRGCT CHFVVKRLYA RPSLALLIYN ERRHVNKAGF VCHGPLDRDA IGPGAKKIPY ICNEIQQQTM SMIYLGIPEE
201: NVLEKHIEGI QRYCGSDATV DSLASQYVHK LGMIIKRSTH ELDLDDQASI KIWAERNKKS IFFYQESSET DQFMLGIQTE WQLQQLVRFG HCSLVAADST
301: FGIKRLKYPL CTLLVFDSRH HALPVAWIIS RSYLKSDVEK WMKILLQRAQ SVEPGFKING FIIDDAATET DPIRDTFCCP ILFSLWRVRR SWLRNVVKKC
401: DSIEVQRDLF KCLGELVYSI WDGVDTTKAL EKLTQDFVDQ TAFMQYFTST WLPKIGMWLS TMKSLPLASQ EACGAIEAYH IKLKVKLFDD THLGALQRVD
501: WLVHKLTTEL HSSYWLDRYA DESDSFQNVK EEYIASTSWY RAMEIPDSAV TLDENNILLA KVQSQRDSDV TRVVWNPGSE FAFCDCTWSL QGNLCKHIIK
601: VNTMCENREG YGDSMSLRSF KEKLRNIKMK PMDDSIALDL SMALTLQMFD QIKQLVRLSG TNDISNIVND LPVKWGCKKG RTTIGIPASI AAFTKKRSQK
701: RKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)