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AT1G52570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.977
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phospholipase D alpha 2
Curator
Summary (TAIR10)
member of C2-PLD subfamily
Computational
Description (TAIR10)
phospholipase D alpha 2 (PLDALPHA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D alpha 1 (TAIR:AT3G15730.1); Has 2026 Blast hits to 1555 proteins in 414 species: Archae - 2; Bacteria - 579; Metazoa - 311; Fungi - 419; Plants - 577; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G52570-MONOMERBioGrid:26914EC:3.1.4.4eggNOG:COG1502
eggNOG:KOG1329EMBL:AC008016EMBL:CP002684EnsemblPlants:AT1G52570
EnsemblPlants:AT1G52570.1entrez:841689Gene3D:2.60.40.150GeneID:841689
Genevisible:Q9SSQ9GO:GO:0004630GO:GO:0005509GO:GO:0005773
GO:GO:0009738GO:GO:0009873GO:GO:0009941GO:GO:0016020
GO:GO:0016042GO:GO:0030136GO:GO:0046470GO:GO:0070290
Gramene:AT1G52570.1gramene_pathway:3.1.4.4gramene_pathway:LIPASYN-PWYgramene_pathway:PWY-3561
hmmpanther:PTHR18896hmmpanther:PTHR18896:SF11HOGENOM:HOG000240112InParanoid:Q9SSQ9
InterPro:IPR000008InterPro:IPR001736InterPro:IPR011402InterPro:IPR015679
InterPro:IPR024632InterPro:IPR025202iPTMnet:Q9SSQ9KEGG:00564+3.1.4.4
KEGG:00565+3.1.4.4KEGG:ath:AT1G52570KO:K01115OMA:YPDDHET
PANTHER:PTHR18896PaxDb:Q9SSQ9Pfam:PF00168Pfam:PF00614
Pfam:PF12357Pfam:PF13091Pfam:Q9SSQ9Pfscan:PS50035
PhylomeDB:Q9SSQ9PIR:D96566PIRSF:PIRSF036470PRIDE:Q9SSQ9
PRO:PR:Q9SSQ9PROSITE:PS50035ProteinModelPortal:Q9SSQ9Proteomes:UP000006548
RefSeq:NP_175666.1SMART:SM00155SMART:SM00239SMR:Q9SSQ9
STRING:3702.AT1G52570.1SUPFAM:SSF49562SUPFAM:SSF56024TAIR:AT1G52570
tair10-symbols:PLDALPHA2UniGene:At.52162UniProt:Q9SSQ9
Coordinates (TAIR10) chr1:-:19583940..19586551
Molecular Weight (calculated) 91603.10 Da
IEP (calculated) 6.18
GRAVY (calculated) -0.41
Length 810 amino acids
Sequence (TAIR10)
(BLAST)
001: MEECLLHGRL HATIYEVDHL HAEGGRSGFL GSILANVEET IGVGKGETQL YATIDLEKAR VGRTRKITKE PKNPKWFESF HIYCGHMAKH VIFTVKDANP
101: IGATLIGRGY IPVEDILHGE EVDRWVDILD NEKNPIAGGS KIHVKLQYFG VEKDKNWNRG IKSAKFPGVP YTFFSQRRGC KVSLYQDAHI PGNFVPKIPL
201: AGGKNYEPHR CWEDIFDAIT NAKHLIYITG WSVYTEISLV RDSRRPKQGG DVTVGELLKK KASEGVKVIL LVWDDRTSVD LLKKDGLMAT HDEETENFFR
301: GTDVNCILCP RNPDDGGSIV QNLQISTMFT HHQKIVVVDS EMPSGGSRSR RIVSFVGGLD LCDGRYDTPF HSLFRTLDTA HHDDFHQPNF TGAAITKGGP
401: REPWHDIHCR LEGPIAWDVL YNFEQRWSRQ GGKDILVKMR ELGDIIIPPS PVLFSEDHDV WNVQLFRSID GGAAAGFPDS PEAAAEAGLV SGKDNIIDRS
501: IQDAYIHAIR RAKDFIYIEN QYFLGSSFAW SADGIKPEEI NALHLIPKEL SLKIVSKIKA GEKFKVYVVV PMWPEGIPES GSVQAILDWQ KRTMEMMYKD
601: VIKALRENGL EGEDPRDYLT FFCLGNREVK KDGEYEPSEK PEPDTDYIRA QEARRFMIYV HTKMMIVDDE YIIIGSANIN QRSMDGARDS EIAMGGYQPY
701: HLSTRQPARG QIHGFRMSLW YEHLGMLDET FLDPSSQECI QKVNRVADKY WDLYSSESLE HDLPGHLLRY PIGIASEGNI TELPGCEFFP DTKARILGVK
801: SDYMPPILTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)