AT1G13150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.454 extracellular 0.429 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytochrome P450, family 86, subfamily C, polypeptide 4 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of CYP86C | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 86, subfamily C, polypeptide 4 (CYP86C4); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily C, polypeptide 3 (TAIR:AT1G13140.1); Has 28361 Blast hits to 28269 proteins in 1476 species: Archae - 44; Bacteria - 2374; Metazoa - 10721; Fungi - 6214; Plants - 7984; Viruses - 3; Other Eukaryotes - 1021 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4481995..4483584 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61335.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.15 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||
| Length | 529 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLTERLYNH LSLFDLLLSL LGLFVFCCLR EKLTNKRGPM LWPVFGITLE FFFHINDVYG WVTRSLKKCR GTFLYRGVWL DGSYGAVTCV PANVEYMLKT 101: NFKNFPKGTF FKSRFNDLLE EGIFNADDDS WKEQRRIIIT EMHSTGFVEH SFQTTQHLVR KKLLKVMESF AKSQEAFDLQ DVFLRLTFDI ICLAGLGADP 201: ETLAVDLPQV PFAKAFEEAT ESTLFRFMIP PFIWKPMRFL DTGYEKGLRI AVGVVHGFVD KMIVDRICEL KEEETLDNRS DVLSRIIQIE SHKRENEIDP 301: STIRFFRQFC TSFILAGRDT SSVALSWFCW VIQKHPEVEN KIICEIREIL RQRGDSPTSK NESLFTVKEL NNMVYLQAAL SETLRLFPPI PMEMKQAIED 401: DVLPDGTFVR KGSRVYFSIY AMGRMESIWG KDCEIFRPER WIQAGKFVSD DQFKYVVFNA GPRLCIGKTF AYLQMKMIAA SVLLRYSIKV VQDHVIAPRV 501: TTNLYMKYGL KVTITPRSLE EKKLESCSM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)