AT3G15400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : anther 20 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
anther 20 (ATA20); Has 85610 Blast hits to 22901 proteins in 1663 species: Archae - 108; Bacteria - 34930; Metazoa - 21370; Fungi - 4329; Plants - 7115; Viruses - 983; Other Eukaryotes - 16775 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5201678..5202928 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 42821.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||
| Length | 416 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQGHQGLCF GFIFLLCFFS STFALRILKD LPMMEPRKLD LNHEMMPGMV MLQPDHEVQP EHTVKPGHTL QSMSGVSEHP EHTVKPGHTL QSMSGALEHP 101: EHKEKPDHKL QSMLGEHPEH KEKPDHKLQS MLGEHPEHKE KPDHKLQSML GEHPEHKEKP DHKLQSMSGE SKHPEHKVKP DQIMQTMASE LEEEDPDHTS 201: KPMGYGVGRG YGSGGSGVGY GVGIGSSGGS GFGEGIGSSG GNGFGEGIGS SGGSGFGEGI GSSGGSGFGE GIGSGGGTGI GIGEGIGSGS AQPNCGPVTG 301: APGSGFGEGI GQGSGPGEGI GIGIGQGGPS VVVPGTRIPP IVVPGAQIPG FVIPGITVPG YGTGCQTGGC NPNPPHYYIP PSCPHCPPFT SGQDKHMSDK 401: GAMTEALAPT SPEIHV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)