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AT3G25050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 3
Curator
Summary (TAIR10)
encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment.
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 3 (XTH3); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: photoperiodism, flowering, plant-type cell wall biogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 2 (TAIR:AT4G13090.1); Has 2162 Blast hits to 2140 proteins in 309 species: Archae - 0; Bacteria - 288; Metazoa - 0; Fungi - 427; Plants - 1372; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G25050-MONOMERCAZy:GH16EC:2.4.1.207eggNOG:COG2273
eggNOG:ENOG410ISM6EMBL:AP000412EMBL:CP002686EMBL:DQ446697
EnsemblPlants:AT3G25050EnsemblPlants:AT3G25050.1entrez:822096Gene3D:2.60.120.200
GeneID:822096Genevisible:Q9LJR7GO:GO:0004553GO:GO:0005618
GO:GO:0009832GO:GO:0010411GO:GO:0016762GO:GO:0048046
GO:GO:0048573GO:GO:0071555Gramene:AT3G25050.1hmmpanther:PTHR31062
hmmpanther:PTHR31062:SF43InParanoid:Q9LJR7InterPro:IPR000757InterPro:IPR008264
InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455KEGG:ath:AT3G25050
KO:K08235OMA:GACESSNPaxDb:Q9LJR7Pfam:PF00722
Pfam:PF06955Pfam:Q9LJR7Pfscan:PS51762PhylomeDB:Q9LJR7
PIRSF:PIRSF005604PRIDE:Q9LJR7PRINTS:PR00737PRO:PR:Q9LJR7
PROSITE:PS51762ProteinModelPortal:Q9LJR7Proteomes:UP000006548RefSeq:NP_189141.1
SMR:Q9LJR7STRING:3702.AT3G25050.1SUPFAM:SSF49899TAIR:AT3G25050
tair10-symbols:XTH3UniGene:At.46272UniProt:Q9LJR7
Coordinates (TAIR10) chr3:+:9126872..9128218
Molecular Weight (calculated) 33260.70 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.54
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYMRIFSVF VVTLWIIRVD ARVFGGRGIE KFVTFGQNYI VTWGQSHVST LHSGEEVDLY MDQSSGGGFE SKDAYGSGLF EMRIKVPSGN TGGIVTAFYL
101: TSKGGGHDEI DFEFLGNNNG KPVTLQTNLF LNGEGNREER FLLWFNPTKH YHTYGLLWNP YQIVFYVDNI PIRVYKNENG VSYPSKPMQV EASLWNGDDW
201: ATDGGRTKVN WSYSPFIAHF RDFALSGCNI DGRSNNVGAC ESSNYWWNAG NYQRLSGNEQ KLYEHVRSKY MNYDYCTDRS KYQTPPRECY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)