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AT4G08670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G36150.1); Has 1817 Blast hits to 901 proteins in 128 species: Archae - 0; Bacteria - 85; Metazoa - 107; Fungi - 89; Plants - 622; Viruses - 16; Other Eukaryotes - 898 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUP7eggNOG:ENOG41106PKEMBL:AB246322EMBL:CP002687
EnsemblPlants:AT4G08670EnsemblPlants:AT4G08670.1entrez:826433GeneID:826433
GO:GO:0006869GO:GO:0008289GO:GO:0016021GO:GO:0031225
Gramene:AT4G08670.1hmmpanther:PTHR33044hmmpanther:PTHR33044:SF27HOGENOM:HOG000083642
InterPro:IPR000528InterPro:IPR016140KEGG:ath:AT4G08670OMA:CICAGLV
Pfam:PF14368PRINTS:PR00382Proteomes:UP000006548RefSeq:NP_192607.2
SMART:SM00499SMR:Q2PE70STRING:3702.AT4G08670.1SUPFAM:SSF47699
TAIR:AT4G08670TMHMM:TMhelixUniGene:At.33736UniProt:Q2PE70
Coordinates (TAIR10) chr4:-:5536765..5538210
Molecular Weight (calculated) 20852.90 Da
IEP (calculated) 7.14
GRAVY (calculated) 0.20
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQSLLLSFV LLLLSSSSLV TPIHARNKSN PAKSPVGAPA PGPSSSDCST VIYSMMDCLG YLGVGSNETK PEKSCCTGIE TVLQYNPQCI CAGLVSAGEM
101: GIELNSTRAL ATPKACKLSI APPHCGIITS GATTPGASPV SPSAGAPTTS PSAAKSPETS ATSPSSDETP SMTAPSPSSS GTNILSVPAL TIVFVIVSSV
201: AYISAFSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)