AT1G28700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleotide-diphospho-sugar transferase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G28710.3); Has 309 Blast hits to 303 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 288; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:10083773..10084958 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38543.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.13 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||
| Length | 338 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSYNNSSGS LALAVALLFA GALYIYFSSR SASDPISGLL QNVNTRLIQY PVDELETVLD KASTGNNKTV IIAMVNKAYV EEDGGGRTML DLFLESFWEG 101: EGTRPLLNHL MVVAADQTAY DRCLFRRLHC YKMDTEGVDL EGEKVYMSKD FIEMMWRRTR LLLDVLSRGY HIIFTDTDVM WLRSPLSRLN VSLDMHISVD 201: RNNVRGQLIN TGFYHARSNN KTISLFQKWY DMRLKSLGMK EQDVLKNLLD SGFFNQLGLN VGFLSTAEFS GFCQDSPDMG AVTTVHANCC VHIPAKISDL 301: SLALRDWKRY KASRVNSRWS PHVECRRSWK DVHYVPKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)