AT5G57320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : villin, putative | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
villin, putative; FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin 4 (TAIR:AT4G30160.1); Has 3179 Blast hits to 2033 proteins in 206 species: Archae - 0; Bacteria - 16; Metazoa - 2271; Fungi - 140; Plants - 219; Viruses - 0; Other Eukaryotes - 533 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23212690..23217549 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 107832.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 962 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTFSMRDLDQ ALQGAGQKSG IEIWRIENFK PVTVPQESHG KFFTGDSYIV LKTTASRSGS LHHDIHYWLG KDSSQDEAGA VAVMTVELDS ALGGRAVQYR 101: EVQGHETEKF LSYFKPCIIP QEGGVASGFN HVKPEEHQTR LYICKGKHVV RVKEVPFVRS TLNHEDVFIL DTESKIFQFS GSKSSIQERA KALEVVQYIK 201: DTYHDGKCDI AAVEDGRMMA DAEAGEFWGL FGGFAPLPKK PAVNDDETAA SDGIKLFSVE KGQTDAVEAE CLTKELLDTN KCYILDCGLE LFVWKGRSTS 301: IDQRKSATEA AEEFFRSSEP PKSNLVSVME GYETVMFRSK FDSWPASSTI AEPQQGRGKV AALLQRQGVN VQGLVKTSSS SSKDEPKPYI DGTGNLQVWR 401: INCEEKILLE AAEQSKFYSG DCYILQYSYP GEDREEHLVG TWFGKQSVEE DRASAISLAN KMVESMKFVP AQARINEGKE PIQFFVIMQS FITFKGGVSD 501: AFKKYIAEND IPDTTYEAEG VALFRVQGSG PENMQAIQIE AASAGLNSSH CYILHGDSTV FTWCGNLTSS EDQELMERML DLIKPNEPTK AQKEGSESEQ 601: FWELLGGKSE YPSQKIKRDG ESDPHLFSCT YTNESLKATE IFNFTQDDLM TEDIFILDCH TEVFVWVGQQ VDPKKKPQAL DIGENFLKHD FLLENLASET 701: PIYIVTEGNE PPFFTRFFTW DSSKSGMHGD SFQRKLAILT NKGKPLLDKP KRRVPAYSSR STVPDKSQPR SRSMTFSPDR ARVRGRSPAF NALAANFEKL 801: NIRNQSTPPP MVSPMVRKLY PKSHAPDLSK IAPKSAIAAR TALFEKPTPT SQEPPTSPSS SEATNQAEAP KSTSETNEEE AMSSINEDSK EEEAEEESSL 901: PTFPYERLKT DSEDPVSDVD LTRREAYLTS VEFKEKFEMT KNEFYKLPKW KQNKLKMSVN LF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)