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AT1G47570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); Has 1137 Blast hits to 1126 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 797; Fungi - 83; Plants - 92; Viruses - 39; Other Eukaryotes - 126 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK7AeggNOG:ENOG410XNR5EMBL:BT011232EMBL:BT012537
EMBL:CP002684EnsemblPlants:AT1G47570EnsemblPlants:AT1G47570.1entrez:841166
ExpressionAtlas:Q6NL06Gene3D:3.30.40.10GeneID:841166GO:GO:0008270
Gramene:AT1G47570.1hmmpanther:PTHR16079InterPro:IPR001841InterPro:IPR013083
InterPro:IPR018957OMA:MPRNLLPPfam:PF00097Pfscan:PS50089
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_175188.3SMART:SM00184
SMR:Q6NL06SUPFAM:SSF57850TAIR:AT1G47570UniGene:At.38596
UniProt:Q6NL06
Coordinates (TAIR10) chr1:+:17478919..17483229
Molecular Weight (calculated) 53106.30 Da
IEP (calculated) 7.60
GRAVY (calculated) -0.49
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTTAETGQS SGSKPSDDDA WAKLVPLDTR FSDIEIRCND MVICSEIKPS SLEKHEWCRI TKNLGQSSAT IHNKSSDAIL VDKAVVPKDG AVDIISGSEI
101: VPGPEEQGYL QYRFTIMPAP ESRTQLLQIS IDPEHAKCSI CLNIWHDVVT AAPCLHNFCN GCFSEWMRRS EEKHKHVLCP QCRTTVQYVG KNHFLKNIQE
201: EILKVDAALR RPAEDIAVLD SSASIQSNLI IGSKRKRRLN MPAPTHEERD SLRLQCPQCV ANIGGYRCEH HGAHLQCHLC QGMMPFRANL QVPLHCKGCD
301: RPFCGAYWSS ENVTQGVSGP VCVRETFRPI SERTITRIPF ITHEMNRHEQ DITQRCIAHM EKTVPDVVAE WLRLFNNREI DRSRMPLNHA ETITASTHVC
401: NDCYDKLVGF LLYWFRITLP RNHLPADVAA REDCWYGYAC RTQHHNEDHA RKRNHVCRPT RGNHHF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)