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AT1G56350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptide chain release factor 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptide chain release factor 2; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor 2 (InterPro:IPR004374), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: high chlorophyll fluorescent 109 (TAIR:AT5G36170.2); Has 16865 Blast hits to 16865 proteins in 2794 species: Archae - 0; Bacteria - 10325; Metazoa - 292; Fungi - 236; Plants - 212; Viruses - 15; Other Eukaryotes - 5785 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1186eggNOG:ENOG410IPQ8EMBL:AC058785EMBL:AC069159
EMBL:CP002684EnsemblPlants:AT1G56350EnsemblPlants:AT1G56350.1entrez:842089
Gene3D:3.30.160.20GeneID:842089Genevisible:F4I532GO:GO:0009570
GO:GO:0016149Gramene:AT1G56350.1hmmpanther:PTHR11075hmmpanther:PTHR11075:SF6
HOGENOM:HOG000074814InterPro:IPR000352InterPro:IPR004374InterPro:IPR005139
InterPro:IPR014720KEGG:ath:AT1G56350KO:K02836ncoils:Coil
OMA:SDWKSHAPANTHER:PTHR11075:SF6PaxDb:F4I532Pfam:F4I532
Pfam:PF00472Pfam:PF03462PIR:E96605PRIDE:F4I532
PRO:PR:F4I532ProteinModelPortal:F4I532Proteomes:UP000006548RefSeq:NP_176032.2
SMART:SM00937SMR:F4I532STRING:3702.AT1G56350.1SUPFAM:SSF75620
TAIR:AT1G56350TIGRfam:TIGR00020TIGRFAMs:TIGR00020UniGene:At.42791
UniProt:F4I532
Coordinates (TAIR10) chr1:+:21094840..21097826
Molecular Weight (calculated) 53430.30 Da
IEP (calculated) 7.40
GRAVY (calculated) -0.35
Length 482 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSLIIRRSR SRFIIHGIKI SCNSLSAVDS SSSVLVSRRT FSSTPALSYF GFNYGKISNL NQRFGNYAYS GSSFASSTRS LSSEAVAVAA TCDGLTVERI
101: IANQWPILDE NEGDWKSHAA AIAQSIQVIK RRLQWKKLLV RLKVLSAELN KSDLWDDPTH AGKISREHGS LTGKMKGVMT FERELLEHID MLKLAKEEND
201: SELESETLKA LIDMRRVSKE KELEALLSAD NDPCSCYIEV QAGAGGTESN DWAAMVMEMY KTWAQRRKFS VTVVDEAPGE IAGIKRATIK VNGEYAYGYA
301: KAEVGVHRLV RISPFDSGKR RHTSFAAVAV IPILGDGSTR VEINDSDLRI ERFRSGGAGG QHANTTDSAV RIVHIPTGIT ATCQNERSQH SNKASAMAVL
401: QSRLDQLEMA RQTAMNAQHT QSLTEISWGN QIRTYVLHPY RMVKDLRTNY EVSDPDSVLE GDLDGFILSF LSSSLDKDDP EH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)