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AT1G13120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : embryo defective 1745
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1745 (emb1745); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GLE1-like (InterPro:IPR012476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05523.1); Has 36705 Blast hits to 24548 proteins in 2114 species: Archae - 242; Bacteria - 8583; Metazoa - 12421; Fungi - 3107; Plants - 1525; Viruses - 221; Other Eukaryotes - 10606 (source: NCBI BLink).
Protein Annotations
BioGrid:23109eggNOG:ENOG410XT57eggNOG:KOG2412EMBL:AC007357
EMBL:AK228913EMBL:CP002684EnsemblPlants:AT1G13120EnsemblPlants:AT1G13120.1
entrez:837869GeneID:837869Genevisible:Q0WPZ7GO:GO:0005635
GO:GO:0005643GO:GO:0015031GO:GO:0016973GO:GO:0048316
Gramene:AT1G13120.1hmmpanther:PTHR12960hmmpanther:PTHR12960:SF0HOGENOM:HOG000083106
InParanoid:Q0WPZ7InterPro:IPR012476KEGG:ath:AT1G13120KO:K18723
ncoils:CoilOMA:EREHHLKPANTHER:PTHR12960PaxDb:Q0WPZ7
Pfam:PF07817Pfam:Q0WPZ7PhylomeDB:Q0WPZ7PIR:D86265
PRIDE:Q0WPZ7PRO:PR:Q0WPZ7ProteinModelPortal:Q0WPZ7Proteomes:UP000006548
RefSeq:NP_172771.1STRING:3702.AT1G13120.1TAIR:AT1G13120tair10-symbols:emb1745
UniGene:At.27690UniProt:Q0WPZ7
Coordinates (TAIR10) chr1:-:4469334..4472775
Molecular Weight (calculated) 69644.10 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.67
Length 611 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIVLEPPCP KSVDGISIDP EPNWNFESLV AEIASVEKKL NGFSMYPQPI TNTTLRMGRR GGGFVMHVSE DEMESDEGEE SDDEEEEEDH SQICTAGKRF
101: ACDELYLSDE SDEEFDHEPE YMMNKLGLAE SALYEVINDH QTEIKDDIRN QVSVVETEIM NEIETSLSAI ARVEKYSETR KEVERKLDLQ YQRKVAEALD
201: THLTAVQREH KIKSQIEERK IRSEEAQEEA RRKERAHQEE KIRQEKARAE AQMLAKIRAE EEKKEVERKA AREVAEKEVA DRKAAEQKLA EQKAVIESVT
301: GSSATSNAQA GGNSIRAAES ALILENHRLK KLEELETTNQ SLKSRSNENF SSFEKHIGRV IRQISGTKDS VSGKINDIVK IFKDPRCPVS ISIAAFAKKM
401: VTTKEKPNPF ACSYVIVYIN SQFPQVMDIL LAEFHKACIY TVPKHIVNSQ SAWDSDAYER LDSIMRLYGA LVQTDIRVGN ATNVHGIEHG WAWLARFLNK
501: IPANRATATA LNSFLQTAGF GLHQRYKSQF LKVVNVVREH FLQKLRAKKD TSDLLVIIAE ITAYLDDRMY LKEPEGRAMK TTSTLSSELT AELNQPNYNQ
601: NYQRNDYRNY Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)