AT1G13120.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : embryo defective 1745 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
embryo defective 1745 (emb1745); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GLE1-like (InterPro:IPR012476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05523.1); Has 36705 Blast hits to 24548 proteins in 2114 species: Archae - 242; Bacteria - 8583; Metazoa - 12421; Fungi - 3107; Plants - 1525; Viruses - 221; Other Eukaryotes - 10606 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:4469334..4472775 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 69644.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.35 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 611 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGIVLEPPCP KSVDGISIDP EPNWNFESLV AEIASVEKKL NGFSMYPQPI TNTTLRMGRR GGGFVMHVSE DEMESDEGEE SDDEEEEEDH SQICTAGKRF 101: ACDELYLSDE SDEEFDHEPE YMMNKLGLAE SALYEVINDH QTEIKDDIRN QVSVVETEIM NEIETSLSAI ARVEKYSETR KEVERKLDLQ YQRKVAEALD 201: THLTAVQREH KIKSQIEERK IRSEEAQEEA RRKERAHQEE KIRQEKARAE AQMLAKIRAE EEKKEVERKA AREVAEKEVA DRKAAEQKLA EQKAVIESVT 301: GSSATSNAQA GGNSIRAAES ALILENHRLK KLEELETTNQ SLKSRSNENF SSFEKHIGRV IRQISGTKDS VSGKINDIVK IFKDPRCPVS ISIAAFAKKM 401: VTTKEKPNPF ACSYVIVYIN SQFPQVMDIL LAEFHKACIY TVPKHIVNSQ SAWDSDAYER LDSIMRLYGA LVQTDIRVGN ATNVHGIEHG WAWLARFLNK 501: IPANRATATA LNSFLQTAGF GLHQRYKSQF LKVVNVVREH FLQKLRAKKD TSDLLVIIAE ITAYLDDRMY LKEPEGRAMK TTSTLSSELT AELNQPNYNQ 601: NYQRNDYRNY Y |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)