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AT4G00550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : digalactosyl diacylglycerol deficient 2
Curator
Summary (TAIR10)
encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane.
Computational
Description (TAIR10)
digalactosyl diacylglycerol deficient 2 (DGD2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G11670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT4G00550-MONOMERBioGrid:13251CAZy:GT4EC:2.4.1.241
eggNOG:ENOG410IINWeggNOG:ENOG410YB77EMBL:AF058919EMBL:AF421193
EMBL:AF421194EMBL:AK220856EMBL:AK228220EMBL:AL161472
EMBL:BT010144EMBL:CP002687EMBL:KJ138776EnsemblPlants:AT4G00550
EnsemblPlants:AT4G00550.1entrez:827960ExpressionAtlas:Q8W1S1GeneID:827960
Genevisible:Q8W1S1GO:GO:0008194GO:GO:0009247GO:GO:0009707
GO:GO:0016036GO:GO:0035250GO:GO:0046481gramene_pathway:2.4.1.241
gramene_pathway:PWY-401hmmpanther:PTHR12526hmmpanther:PTHR12526:SF344HOGENOM:HOG000239858
InParanoid:Q8W1S1IntAct:Q8W1S1InterPro:IPR001296KEGG:ath:AT4G00550
KO:K09480ncoils:CoilOMA:CIPDEVAPaxDb:Q8W1S1
PDB:2L7CPDBsum:2L7CPfam:PF00534Pfam:Q8W1S1
PhylomeDB:Q8W1S1PIR:T01219PRIDE:Q8W1S1PRO:PR:Q8W1S1
ProteinModelPortal:Q8W1S1Proteomes:UP000006548RefSeq:NP_191964.2STRING:3702.AT4G00550.1
SUPFAM:SSF53756SwissLipids:SLP:000001449TAIR:AT4G00550tair10-symbols:DGD2
UniGene:At.43438UniProt:Q8W1S1UniProt:W8PV82
Coordinates (TAIR10) chr4:-:238154..240019
Molecular Weight (calculated) 53910.20 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.39
Length 473 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNQQEQHIA IFTTASIPWL TGTAVNPLFR AAYLANDGER RVTLVIPWLT LKHQKLVYPN SITFSSPSEQ EAYVRQWLEE RVSFRLAFEI RFYPGKFAID
101: KRSILPVGDI SDAIPDEEAD IAVLEEPEHL TWFHHGQKWK TKFNYVIGIV HTNYLEYVKR EKQGRVKAFF LKYLNSWVVG IYCHKVIRLS AATQEYPKSI
201: VCNVHGVNPK FLEIGLRKLE QQKLQEQPFT KGAYYIGKMV WSKGYKELLK LLEKHQKELA ELEVDLYGDG EDSEEIKEAA RKLDLTVNVY PGRDHADSLF
301: HNYKVFLNPS TTDVVCTTTA EALAMGKIVV CANHISNKFF KQFPNCRTYD DGQGFVRATL KALGEQPSQL TEQQRHELSW EAATQRFIKV SDLNRLSRAD
401: SNLSKRSVFA SSSISVGKNL EDMSAYIHFL ASGFEASRTA FGAIPGSLQP DEELCRDLGL SLNTPSPNTR KQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)