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AT1G33760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: cotyledon, leaf whorl, cauline leaf, seed, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G71450.1); Has 5874 Blast hits to 5616 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5861; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1FPeggNOG:ENOG4111977EMBL:AC010164EMBL:AY560838
EMBL:BT015928EMBL:BT020566EMBL:CP002684EnsemblPlants:AT1G33760
EnsemblPlants:AT1G33760.1entrez:840267Gene3D:3.30.730.10GeneID:840267
Genevisible:Q9LQ28GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009873Gramene:AT1G33760.1hmmpanther:PTHR31985
hmmpanther:PTHR31985:SF28HOGENOM:HOG000237624InParanoid:Q9LQ28InterPro:IPR001471
InterPro:IPR016177KEGG:ath:AT1G33760OMA:FPRPESSPaxDb:Q9LQ28
Pfam:PF00847Pfam:Q9LQ28Pfscan:PS51032PhylomeDB:Q9LQ28
PIR:A86461PRIDE:Q9LQ28PRINTS:PR00367PRO:PR:Q9LQ28
PROSITE:PS51032ProteinModelPortal:Q9LQ28Proteomes:UP000006548RefSeq:NP_174636.1
SMART:SM00380SMR:Q9LQ28STRING:3702.AT1G33760.1SUPFAM:SSF54171
TAIR:AT1G33760UniGene:At.39878UniProt:Q9LQ28
Coordinates (TAIR10) chr1:+:12237944..12238498
Molecular Weight (calculated) 21087.50 Da
IEP (calculated) 4.91
GRAVY (calculated) -0.75
Length 184 amino acids
Sequence (TAIR10)
(BLAST)
001: MENTYVGQRD YRFNVNQLSY RGIRRRKWGK WVSEIREPGK KTRIWLGSYE TAEMAAAAYD AAALHLRGRG TNLNFPELVD SFPRPESSSS EHIQAAAQDA
101: ALMFKPGRLS EPALESGQGL SRVGLSPDQI QAINESPLDS PRMGWMQDLE VADYEELYGQ FFGQHDRDEF FEMQQFQSIW NSNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)