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AT1G26760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SET domain protein 35
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SET domain protein 35 (SDG35); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: SET domain group 37 (TAIR:AT2G17900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2940eggNOG:KOG2084EMBL:CP002684EnsemblPlants:AT1G26760
EnsemblPlants:AT1G26760.1entrez:839217Gene3D:1.25.40.10GeneID:839217
Gramene:AT1G26760.1hmmpanther:PTHR12197hmmpanther:PTHR12197:SF126InParanoid:F4HPB8
InterPro:IPR001214InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734
iPTMnet:F4HPB8KEGG:ath:AT1G26760OMA:MWKNFIDPaxDb:F4HPB8
Pfam:PF00856Pfam:PF13414Pfscan:PS50280Pfscan:PS50293
PRIDE:F4HPB8PROSITE:PS50280PROSITE:PS50293ProteinModelPortal:F4HPB8
Proteomes:UP000006548RefSeq:NP_173998.2SMART:SM00028SMART:SM00317
SMR:F4HPB8STRING:3702.AT1G26760.1SUPFAM:SSF48452SUPFAM:SSF82199
TAIR:AT1G26760tair10-symbols:ATXR1tair10-symbols:SDG35UniGene:At.41196
UniGene:At.74090UniProt:F4HPB8
Coordinates (TAIR10) chr1:-:9248304..9249941
Molecular Weight (calculated) 61311.20 Da
IEP (calculated) 6.16
GRAVY (calculated) -0.27
Length 545 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGEQFELEE DRDGPLELLQ SLRSKATELL LREEWEESIK VYTEFIDLSR RQVSSTGGSD PDPDSIAKLR KSLCLALCNR AEARARLRDF LEAMRDCDQA
101: LEIEKTHFKT LLCKGKVLLG LSKYSLALEC FKTALLDPQA SDNLETVTVY IEKCKKLEFQ AKTGAFDLSD WILSEFRGKC PELAEFIGSI EIKKSELSGR
201: GLFATKNIVA GTLVLVTKAV AIERGILGNG ECGEKAQLIM WKNFVEEVTE SVRKCGRTRR VVSALSTGQG EDSLEIPEIA LFRPDEAFET CGDWKQSLDT
301: EKLLSILDVN SLVEDAVSGK VMGKNKEYYG VGLWTLASFI NHSCIPNARR LHVGDYVIVH ASRDIKTGEE ISFAYFDVLS PLEKRKEMAE SWGFCCGCSR
401: CKFESVLYAT NQEVREFEMG LERGVDAGNA VYMVEEGMKR WKVKGKDKGL LRASYWGVYD EIYNSERLMK RWGRKIPTME VVVDSVSDVV GSDERLMKMA
501: VEGMMKKHGG FSNIVEMEKI MKLGKGVYGK VVSKKKAMKT LLGIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)