suba logo
AT1G05440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.714
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C-8 sterol isomerases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C-8 sterol isomerases; FUNCTIONS IN: C-8 sterol isomerase activity; INVOLVED IN: ergosterol biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ERG2/sigma1 receptor-like (InterPro:IPR006716); Has 118 Blast hits to 118 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 4; Plants - 21; Viruses - 1; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVQ7eggNOG:ENOG410YIDJEMBL:AY800563EMBL:AY924653
EMBL:CP002684EnsemblPlants:AT1G05440EnsemblPlants:AT1G05440.1entrez:837045
GeneID:837045GO:GO:0016021GO:GO:0016853Gramene:AT1G05440.1
hmmpanther:PTHR10868hmmpanther:PTHR10868:SF1InterPro:IPR006716KEGG:ath:AT1G05440
OMA:EPWTPPMPfam:PF04622Proteomes:UP000006548RefSeq:NP_172035.2
STRING:3702.AT1G05440.1TAIR:AT1G05440TMHMM:TMhelixUniGene:At.51160
UniProt:Q5Q0I8
Coordinates (TAIR10) chr1:-:1596374..1597843
Molecular Weight (calculated) 43434.90 Da
IEP (calculated) 8.82
GRAVY (calculated) -0.34
Length 384 amino acids
Sequence (TAIR10)
(BLAST)
001: MINRETMKGK ILVSPSEKSM TSSTTTTTTT TTTVSTEDWE RRDSNCYFPD CRKDANCSCE ICLDSLNATL DLMPLSVQKS SLTKLSSASN FKSTVESTPT
101: SFDPTVVTTP ASVSRPILKL MISSPKKKLT KKSKVFENEE QRKTTKKERR LLIVVFLKVI LVIGLVLGLE LGFSWVLEEV FKPEFTEEIV RNAYERTQAD
201: LDLGVKLRLL EDEFKGFVTS RKFSRCTGSD SKWKINQDGP MLNSKCVLYK SAIEEVSIWG WPLQTSGLFH TGFSSSSITV LSGRVTEWTE GKFGYSIHET
301: NTSWGKTKWS TSVLQLDPNT WVLEYSQSSV MDDSSSLLSL TIDIMEHLVF RVAKNVNRER YWMFSSSRRL YREAESKASA MTPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)