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AT4G17000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 2862 Blast hits to 2331 proteins in 349 species: Archae - 6; Bacteria - 408; Metazoa - 833; Fungi - 223; Plants - 134; Viruses - 7; Other Eukaryotes - 1251 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKPDeggNOG:ENOG410YJREEMBL:AL161545EMBL:CP002687
EMBL:Z97342EnsemblPlants:AT4G17000EnsemblPlants:AT4G17000.1entrez:827408
GeneID:827408Gramene:AT4G17000.1hmmpanther:PTHR37241HOGENOM:HOG000114098
KEGG:ath:AT4G17000ncoils:CoilOMA:ALPLECEPhylomeDB:O23544
PIR:B71438PIR:C71438Proteomes:UP000006548RefSeq:NP_193433.1
STRING:3702.AT4G17000.1TAIR:AT4G17000UniGene:At.54369UniProt:O23544
Coordinates (TAIR10) chr4:-:9567046..9569913
Molecular Weight (calculated) 75345.10 Da
IEP (calculated) 10.12
GRAVY (calculated) -0.78
Length 674 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAFEHMIVD EFNEEDFYET IEAPKFVDLT APDHRPEGDD RYWFCSRVGC DQKHEEFLDS EAIYKKFVLR VMAARSPSVR LRKALYRKDF SVDPKCPNTV
101: PAKPSRSRVS KLAMISSIPQ KGNGNIRSKE VKVVSTNKNV TPKAKAKGKE SAVISSVPQK ALTERKKQMQ SPAAFRSVQN PRNATIKVSE NRVVAKALVF
201: QSPKKLVKLK RSVELSSSVK KLCNGMRKLE IDNKRNGLGV NHKVVSSASS RRPLKTREVK SRVFDSLRSQ KQIDQKDKGV STLKKRVKKK EDPVPSSDPL
301: KPYDSNGMEV EDKTSRDEEL LVENKSEELS DTSKANMNNQ LQAREDPAVI KESGLATSQK YQITEIEEKE SALASECEDK ENANIVAAID KEDIAVIKVS
401: GLDKAKQCET VEIEDKENAL PLECEKKENA TNATDVDRED DKENSSALDN NRNLDQATYP LLKKKVFGKK EICKTTQKVM TVADKCFNGK TVSAGTRVKY
501: TKPKLTNPKP FRLRTDERQI LKEANTEKKP QCTLAKEDTA SIRGFHGENL GPNHQPVRVS SFCSILMSVH RLEKNSASRL KASRGTSTKL VSENMVDCKR
601: VALGRKKQVA NKRIETAEQA SQMNGGSKEV PIINKPSVCV VASGEKRPVT VPKGPNFHCI HVPKSCTKRV ASEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)