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AT1G21360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.967
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycolipid transfer protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycolipid transfer protein 2 (GLTP2); FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: Glycolipid transfer protein (GLTP) family protein (TAIR:AT3G21260.3); Has 509 Blast hits to 509 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 240; Fungi - 112; Plants - 114; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YFEAeggNOG:KOG3221EMBL:AC015447EMBL:AK221557
EMBL:BT012277EMBL:CP002684EnsemblPlants:AT1G21360EnsemblPlants:AT1G21360.1
entrez:838735Gene3D:1.10.3520.10GeneID:838735Genevisible:Q6NLQ3
GO:GO:0005737GO:GO:0017089GO:GO:0051861Gramene:AT1G21360.1
hmmpanther:PTHR10219hmmpanther:PTHR10219:SF34HOGENOM:HOG000199421InterPro:IPR014830
KEGG:ath:AT1G21360OMA:LVEECYMPaxDb:Q6NLQ3Pfam:PF08718
Pfam:Q6NLQ3PhylomeDB:Q6NLQ3PIR:G86346PRIDE:Q6NLQ3
PRO:PR:Q6NLQ3ProteinModelPortal:Q6NLQ3Proteomes:UP000006548Reactome:R-ATH-1660662
RefSeq:NP_173558.4SMR:Q6NLQ3SUPFAM:0043785SUPFAM:SSF110004
TAIR:AT1G21360tair10-symbols:GLTP2UniGene:At.41660UniProt:Q6NLQ3
Coordinates (TAIR10) chr1:+:7481365..7483237
Molecular Weight (calculated) 25706.50 Da
IEP (calculated) 7.34
GRAVY (calculated) -0.22
Length 223 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRKRYEMEK KKKTEIQTAI EELSVFIVTK PADKTEATHI PLRPILSFCS LIIQVLDKIG PTMAVLRQDI DQNIQRLEKF YETDSCVYSN LAEILKKEKE
101: EGTSKMVASC GRALFWLTRT MDFTAGLLRL LSKEMSSKME ELVEECYMTT LKPHHGWIAS AAFKVCLKLV PDNKTFMEAI GARDESYDTL REDIDTLSSL
201: LTPILKEIYF VLEQYGLSRL RSM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)