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AT5G61260.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant calmodulin-binding protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant calmodulin-binding protein-related; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT5G07820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVYFeggNOG:ENOG41105FTEMBL:AB010073EMBL:CP002688
EnsemblPlants:AT5G61260EnsemblPlants:AT5G61260.1entrez:836247GeneID:836247
Gramene:AT5G61260.1hmmpanther:PTHR33349hmmpanther:PTHR33349:SF1HOGENOM:HOG000152548
InterPro:IPR012417KEGG:ath:AT5G61260OMA:ANESAHCPfam:PF07839
PhylomeDB:Q9FLK7Proteomes:UP000006548RefSeq:NP_200934.1SMART:SM01054
TAIR:AT5G61260UniGene:At.55657UniProt:Q9FLK7
Coordinates (TAIR10) chr5:+:24637109..24638599
Molecular Weight (calculated) 54075.70 Da
IEP (calculated) 10.72
GRAVY (calculated) -0.90
Length 496 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEENTSEVK DIENSSDTNP PKMSEEGSLE TVRVKDVENV EDVIAVVAKD QEEIIPEIIE VPKPQGGTLR RHSTGTISKP QVQSRYRGNH RVGSTHDLCK
101: HGKKCDQDDA VKPWKIARRK SVEGSVVIKV ETPSSTRKSL GSVSRQSPGI TKPDSSVSAK RDALAVKKKP CASVNSESSS KEGSEIAKSV DGLSVKSNDR
201: ARKNKETESG LSGSAVVKKV PALRTDKSST STGVGSSKVC APKNLKNVEK AKTTQTISGE DVKEKTVCVV ESSVKGVKSE KQPSSEKKTM KSGNKSLSTT
301: PKRGSSPTKQ IPGKISTGLT KKKETGSADV VEANPKPEKK VRPKKTGVKV SLAQQMTFKK GKVLDPKPED SSPRWIKFKK RVVQELKTQS EGKKKNLKDR
401: RLGVETKTDS CEGSKREKVV LRHRKVEGKK KMITLFNNVI EETVNKLTKV RKHKVKALIG AFETVISLQD TNKTSHKPQS KATTSASKVR PLVSEQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)