AT4G35380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SEC7-like guanine nucleotide exchange family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SEC7-like guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT4G38200.1); Has 2864 Blast hits to 2569 proteins in 246 species: Archae - 2; Bacteria - 36; Metazoa - 1544; Fungi - 584; Plants - 258; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16819883..16825960 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 190836.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.87 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1706 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSTSQTLGGA TRCGRIIGPS LDKIIKNAAW RKHTYLVSSC KSVLDKLESL PDDFHDPSSV VSGLAASDAD SVLQPFLLSL ETAYSKVVEP SLDCAFKLFS 0101: LSILRGEIQS SKQDSILFKL VNAVSKVGAI AEEPIQLAVL RVLLAAVRSP CILIRGDCLL HVVKTCYNIY LGGLSGTTQI CAKSVLAQMM LVIFTRSEED 0201: SLDVSVKTIY VNELLTFTDK SVNEGSSVYF CQGFVNEVMA AGQGSPLPPP DVIQILLQNP ETETVMTPDS PSFRGYVANG EGDSETGDMS KVRQDAFLLF 0301: KNLCKLSMRF SSKENNDDQI MVRGKTLSLE LLKVIIDNGG SVWRTNESFI NAVKQYLCLS LLKNSAVSIM SIFQLQCAIF MSLLSKLRSV LKAEIGIFFP 0401: MIVLRVLENV LQPSYLQKMT VLNLLDKMSQ DPQLMVDIFV NYDCDVESSN ILERIVNGLL KTALGPPTGS STTLSPAQDS TFRNDSVKCL VNLAKAMGNW 0501: MDQQLKVNET VWPKGSQVYA SMDSNASQIS ELEGTISDCD SQPDTSNPEA YDASMLEQRR AYKIELQKGI SLFNRKPSKG VEFLISTKKI GSSPEEVASF 0601: LMKTAGLNGT VIGDYLGERD ELPLKVMHAY VDSFNFEKKD FVEAIRFFLR GFRLPGEAQK IDRIMEKFAE HYWKCNPGSF TSADTAYVLA YSVIMLNTDA 0701: HNNMVKDKMT KADFVRNNRG IDDGKDLPEE YLGSLYDRVV KEEIRMNSDT LAPQNKQVNG LNKLLGLDGI LNLVSWMQPD EKPHGANGRL IRDIQEQFQA 0801: KPEKSESVYH TVTDISILRF ILEVSWGPML AAFSVTIDQS DDRLATSLCL QGFRYAVHVT AVMGMQTQRD AFVTSMAKFT NLHCAADMKQ KNVDAVKAII 0901: TIAIEDGNHL HGSWEHILTC LSRIEHLQLL GEVSPSEKRY VPTKKAEVDD KKALGFPNLK KRGSFQNPSV MAVVRGGSYD STSLVKSVPK LVTPEQIKSF 1001: IANLNLLDQI GNFELNHVYA NSQRLNSEAI VSFVKALCKV SMSELQSPTD PRVFSLTKLV ETAHYNMNRI RLVWSRIWNV LSDFFVSVGL SENLSVAIFV 1101: MDSLRQLSMK FLEREELANY HFQHEFLRPF VVVMQKSSSA EIRELIVRCV SQMVLSRVSN VKSGWKNVFT VFTTAALDER KNIVLLAFET IEKIVRDHFH 1201: CIIETEITVY ADCIRCLITF TNSKFEGDIG FNTIEFLRFC ALKLEEGGLV LNEKLKNNTI SALKEDFSDT QSFTDLDEQV SYWIPLLTGL CKQVSDPRPA 1301: IRKRSIEVLF HILMDHGHLF TRPFWTGIFS SIILPVFNNI RSKTDMLFEE SVDSPSSASL DTEETTWDVE TSTLALQLLV DLLVKFFRSV RSQLPSVVSI 1401: IVGFIKSPFQ GSTGSGISVL LHLADGLARS ASEDEWREIF LALKEAASLT FAGFMKVLRT MDDIEDVETL SGQSVNIGDL DDDSLHIMSY VVSRTKKHID 1501: VLSQIVEVVS DLYRRNQFSL SASHVDILAD IFSCIASHAQ QLNTDTVLRR KFKRACSVQN LTEPQLLNFE NEAYKSYMMF LQDMVTCNPN VSKELDLESR 1601: LVTECAKIVK IYLKCTDPQQ QEQQQRKPVL WVLPMESDRV EEATARTSLL VSSLEALCSL EAESLKKHVS SFFPLLVDLV RTEHCSPQVP YVLSNVLKSC 1701: IGPILA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)