AT3G51540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08670.1); Has 22744 Blast hits to 9965 proteins in 783 species: Archae - 64; Bacteria - 2760; Metazoa - 8515; Fungi - 3864; Plants - 499; Viruses - 702; Other Eukaryotes - 6340 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19115342..19117210 | ||||||||||||||||||||
| Molecular Weight (calculated) | 47256.90 Da | ||||||||||||||||||||
| IEP (calculated) | 11.23 | ||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||
| Length | 438 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDRSLKKSL PGKSNRQADE NLDLFSVNRG TSLDVLIKPG RHSFQQAKVA KHGPDDDNNH NIHANEPLYT IAEVPLGDLS RLVLEARNTT SKLQSITTTR 101: VPLRSESDPS SRPTRSGSTI RPSNIPTIRS SSVPKKTTTT QIQASASVSS PKRTVSRSLT PSSRKTPSPT STPSRISTTT STTPSFKTAG DAQRSRSLTP 201: RAKPQIAANA SSRTNVRSSS VTSRPDRSTT VSATPRTPPR LKETVTLAFG RPVGHVNSPK RNTSPDVTRT RPKGRSASPS LIPTFSGTSH TTTTPKSIKP 301: SATVADSTRP GRKLSRASVQ MAINHLDLAR NGKVSTHTFS SPMLYPHSIR SSSSGLRKPC GSSEGSCSSS NHEEEDGRSL TKEGNNTENK NDSARYDALL 401: NVKDVKDTNW LLNIDDESPQ SLIFDNAFDS PPDLFSPL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)