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AT3G20340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 40 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2AMeggNOG:ENOG410Z7U7EMBL:AB024036EMBL:BT011597
EMBL:BT012235EMBL:CP002686EnsemblPlants:AT3G20340EnsemblPlants:AT3G20340.1
entrez:821578GeneID:821578GO:GO:0006979Gramene:AT3G20340.1
hmmpanther:PTHR33647hmmpanther:PTHR33647:SF5HOGENOM:HOG000153107KEGG:ath:AT3G20340
OMA:RHESEMHPhylomeDB:Q9LTR0Proteomes:UP000006548RefSeq:NP_188669.1
STRING:3702.AT3G20340.1TAIR:AT3G20340UniGene:At.38253UniProt:Q9LTR0
Coordinates (TAIR10) chr3:-:7093075..7093422
Molecular Weight (calculated) 13512.70 Da
IEP (calculated) 6.14
GRAVY (calculated) -0.95
Length 115 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNCLRHESE MHWAGEDWDE FITEDEEDHH YSSKTTRDGK PVIVTRDSKS SVPSHEIKIR LTKKQLHDLL SKVNVHDLTF QQQTFSCPIL NNRGYEEANQ
101: QRLWRPVLQS IPEVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)