AT5G55670.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G13190.1). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22544669..22546801 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64028.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.09 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.23 | ||||||||||||||||||||||||||||||||||||
| Length | 585 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDEGDGRDQM DQFHQNEAIS AVADDGFMAE EEDDDYEDLY NDVNVGEGFL QSMKKNDEAG SRNEEKEKVN MEEEDRVEPV LGEAEVSISI PGLVGESVEK 101: EAEAESGGGG SGSGTDVVVA SSGYGAQEVK VSDVSQEIPG GIGTGTGGGL RVELGQASNR ANDLEAPRGN NISQGLLPPP PVLGNNENLM RPVMGNVNGG 201: IPPGPGSNMV GNGANIAMPG VVGGGTGGGG GGGAFLFVGD LHWWTTDAEL EAELCKYGAV KEVKFFDEKA SGKSKGYCQV EFYDPVAASA CKDALNGYPF 301: NGRPCVVEYA SPYSVKRMGE AQVNRTQQAQ SVIAQAKRGG PADPPSKPLV ANNNNNNNNN AIGGNFQGGE NRGFGRGNWG RGNAQGMGGR GPGGPMRNRP 401: NGMGGRAAES SYGEEAASDH QYGEVNHERG ARPNPVKEKE RASEREWSGS SDRRNREDKD AGYERDIPRE KDVGHGYDMP ERRHRDDRDT GREREREHHH 501: KDRERSREHV RDRERERERD RHREERERYG GDHRTRHRDE PEHDEEWNRG RSSRGHNKSR LSREDNHRSK SRDTDYGKRR RLTTE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)