AT5G45300.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.654 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : beta-amylase 2 | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
beta-amylase 2 (BMY2); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 1274 Blast hits to 1254 proteins in 201 species: Archae - 0; Bacteria - 92; Metazoa - 229; Fungi - 10; Plants - 856; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18353636..18356696 | ||||||||||||
| Molecular Weight (calculated) | 76937.30 Da | ||||||||||||
| IEP (calculated) | 6.11 | ||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||
| Length | 687 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHTLNNTITT TTGSQDPNLD PIPDPDQFPN RNRNQPQSRR PRGFAAAAAA ASIAPTENDV NNGNIAGIGG GEGSSGGGGG GGGKGKRERE KEKERTKLRE 101: RHRRAITSRM LAGLRQYGNF PLPARADMND VIAALAREAG WSVEADGTTY RQSQQPNHVF PTRSIESPLS SSTLKNCAKA AIESQQHSVL RNDEKLAPVS 201: LDSIGIAESD HPGNGRYTSV SPITSVGCLE ANQLIQDVHS AEQCNDFTES FYVPVYAMLP VGIIDNFGQL VDPEGVRQEL SYMKSLNVDG VVIDCWWGIV 301: EGWNPQKYVW SGYRELFNLI RDFKLKLQVV MAFHEYGGNA SGNVMISLPQ WVLKIGKDNP DIFFTDREGR RSFECLNWSI DKERVLHGRT GIEVYFDFMR 401: SFRSEFDDLF VEGLITAVEI GLGASGELKY PSFPERMGWI YPGIGEFQCY DKYSQLSLQK EAKSRGFTFW GKGPENAGQY SSHPHETVFF QERGEYDSYY 501: GRFFLNWYSQ LLIGHAENVL SLANLAFEET KIIVKIPAIY WSYKTASHAA ELTAGYYNPS NRDGYSLVFE TLKKYSVTVK FVCPGPQMSP NAHEEALADP 601: EGLSWQVINA AWDKGLQIGG ENAITCFDRD GCMRLIDIAK PRNHPDGYHF SFFTYRQPSP LVQGSTCFPD LDYFIKRMHG DIRDKQF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)