AT5G43960.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.924 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT3G25150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17689154..17691220 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43487.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.61 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 391 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVMSLNFTAI EVKTINSVES WEGGVLVVVS GSVKTKEFSN RRSFVQTFFL APQEKGYFVL SDVFLFVDEG TVYYHQPSYL SEIKHEAQLN PPTRHPDPQV 101: SDYVLEEEAS DYVNAVQIKD DLVDKYSLQE DQHQPQHEDY EDEVAIEETP REEVAVDVVH EHRAAPVEEP VGEKSKMSYA SILKVAKEAA TVPVAATQPS 201: YNKSSQDINE WDQPMRTPSP QLAAPLAPIQ QSNSSTYVSD YGAEAEDGSG FEDFEFKSVY VRNLPSDISA SEIEEEFKNF GTIKPDGVFL RTRKDVMGVC 301: YAFVEFEDMT SVENAIKASP IYLGGRQVYI EERRPNPAGV RGARRGGGRG RGGYPTEAPR GRFGGRGSGR GNQDGGDYRP RGNGYYRGGG R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)