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AT5G12330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.769
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lateral root primordium (LRP) protein-related
Curator
Summary (TAIR10)
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.
Computational
Description (TAIR10)
LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G12330EnsemblPlants:AT5G12330.1entrez:831108GO:GO:0009734hmmpanther:PTHR31604hmmpanther:PTHR31604:SF2Pfam:PF05142
Pfam:Q94CK9RefSeq:NP_974772.1tair10-symbols:LRP1TIGRfam:TIGR01623TIGRfam:TIGR01624UniProt:Q94CK9
Coordinates (TAIR10) chr5:-:3987677..3989074
Molecular Weight (calculated) 33619.70 Da
IEP (calculated) 8.57
GRAVY (calculated) -0.62
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MGMVGLRDVF LVAPAYHHQN AGVISGSDHM NSNAAAAAAL GVGVIPLLTA GTPQQNVEDS DINFLGNNRR WQNNNNNHET QYLHFKSTNQ TTVGTSSNNS
101: GSGSGASGTA TCQDCGNQAK KECKQRRCRT CCKSRGFDCS THVKSTWVSA ARRRERQVMP TGANPTAGSS LSTSSGTKKP RIVGSQQQQQ QQATSHTSTS
201: NTPPQSFETS SSRQDGGGSR EAWPGQVRAA AVFKCVRVTA VEDGDDEYAY QAVVKIGGHV FKGFLYDQGL EPKEGFPSMS DLHLGGSANN HNGVSASAPI
301: LDPPNVVYGG GGGSGGGFYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)