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AT2G21400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.952
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SHI-related sequence3
Curator
Summary (TAIR10)
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
Computational
Description (TAIR10)
SHI-related sequence3 (SRS3); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 181 Blast hits to 177 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTSZeggNOG:ENOG41107JDEMBL:AC006841EMBL:AY163777
EMBL:CP002685EnsemblPlants:AT2G21400EnsemblPlants:AT2G21400.1entrez:816679
GeneID:816679GO:GO:0003677GO:GO:0005634GO:GO:0007275
GO:GO:0009734GO:GO:0009851GO:GO:0046872Gramene:AT2G21400.1
hmmpanther:PTHR31604HOGENOM:HOG000242956InParanoid:Q9SJT8InterPro:IPR006510
InterPro:IPR006511InterPro:IPR007818KEGG:ath:AT2G21400OMA:MMREDEG
PaxDb:Q9SJT8Pfam:PF05142Pfam:Q9SJT8PhylomeDB:Q9SJT8
PIR:G84600PRIDE:Q9SJT8PRO:PR:Q9SJT8Proteomes:UP000006548
RefSeq:NP_179735.1STRING:3702.AT2G21400.1TAIR:AT2G21400tair10-symbols:SRS3
TIGRfam:TIGR01623TIGRfam:TIGR01624TIGRFAMs:TIGR01623TIGRFAMs:TIGR01624
UniGene:At.39573UniProt:Q9SJT8
Coordinates (TAIR10) chr2:+:9158390..9159541
Molecular Weight (calculated) 19814.80 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.56
Length 174 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMIMGRKCE DCGNQAKKDC VYMRCRTCCK SKAFHCQTHI KSTWVPAYRR SHHKHQSQPL STSIPKGVQI HTTPGHFPAE LSSLADFRCV KVSSIDDGKE
101: QYAYQTTVNI GGHVFRGILH DQGLHKVMVD HHYNKNSNNH QELLTPSTSS CPLKITSPFT DFMFGTRFSS VLRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)