AT4G39850.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : peroxisomal ABC transporter 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
peroxisomal ABC transporter 1 (PXA1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:18489220..18496762 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 151145.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.27 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1352 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPSLQLLQLT ERGRGLVASR RKSILLAAGI VAAGGTAVYL KSRVASRRPD SSRLCNGQSD DDETLEKLTA TDQNAKITTK KKKGGGLKSL QVLTAILLSQ 0101: MGKMGARDLL ALVATVVFRT ALSNRLAKVQ GFLFRAAFLR RAPLFLRLIS ENIMLCFMLS TLHSTSKYIT GALSLRFRKI LTKIIHSHYF ENMVYYKISH 0201: VDGRITHPEQ RIASDVPRFS SELSDLILDD LTAVTDGILY AWRLCSYASP KYIFWILAYV LGAGTAIRNF SPSFGKLMSK EQQLEGEYRQ LHSRLRTHSE 0301: SIAFYGGETR EESHIQQKFK NLVSHMSHVL HDHWWFGMIQ DFLLKYLGAT VAVILIIEPF FSGHLRPDDS TLGRAEMLSN IRYHTSVIIS LFQALGTLSI 0401: SSRRLNRLSG YADRIHELMA VSRELSGDDK SSFQRNRSRN YLSEANYVEF SDVKVVTPTG NVLVEDLTLR VEQGSNLLIT GPNGSGKSSL FRVLGGLWPL 0501: VSGHIVKPGV GSDLNKEIFY VPQRPYMAVG TLRDQLIYPL TSGQESELLT EIGMVELLKN VDLEYLLDRY QPEKEVNWGD ELSLGEQQRL GMARLFYHKP 0601: KFAILDECTS AVTTDMEERF AAKVRAMGTS CITISHRPAL VAFHDVVLSL DGEGGWSVHY KRDDSALLTD AEIDSVKSSD TDRQNDAMVV QRAFAAARKE 0701: SATNSKAQSY QTQLIARSPV VDKSVVLPRF PQPQTSQRAL PSRVAAMLNV LIPTIFDKQG AQLLAVACLV VSRTLISDRI ASLNGTTVKY VLEQDKAAFV 0801: RLIGLSVLQS GASSIIAPSL RHLTQRLALG WRIRLTQHLL RNYLRNNAFY KVFHMSGNSI DADQRLTRDL EKLTADLSGL LTGMVKPSVD ILWFTWRMKL 0901: LTGQRGVAIL YTYMLLGLGF LRRVAPDFGD LAGEEQQLEG KFRFMHERLN THAESIAFFG GGAREKAVSF LIALAIAAGF WVMVDKKFRA LLDHSLMLLR 1001: KKWLYGILDD FVTKQLPNNV TWGLSLLYAL EHKGDRALVS TQGELAHALR YLASVVSQSF MAFGDILELH KKFLELSGGI NRIFELDEFL DASQSGVTSE 1101: NQTSRLDSQD LLSFSEVDII TPAQKLMASK LSCEIVSGKS LLVTGPNGSG KTSVFRVLRD IWPTVCGRLT KPSLDIKELG SGNGMFFVPQ RPYTCLGTLR 1201: DQIIYPLSKE EAEKRAAKLY TSGESSTEAG SILDSHLKTI LENVRLVYLL ERDVGGWDAT TNWEDILSLG EQQRLGMARL FFHRPKFGVL DECTNATSVD 1301: VEEQLYRVAR DMGVTFITSS QRPALIPFHS LELRLIDGEG NWELRSIEQT TE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)