AT4G33240.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.957 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FORMS APLOID AND BINUCLEATE CELLS 1A (FAB1A); CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT3G14270.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:16029504..16037278 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 195759.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.95 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1753 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSQDHKAPG FVDIVKSWIP RKSESSNMSR DFWMPDQSCP VCYECDAQFT VFNRRHHCRL CGRVFCAKCA ANSIPSPSDE TKDSHEEPER IRVCNYCYKQ 0101: WEQGIVPPDN GASIISLHFS SSPSARSVAS TTSNSSNCTI DSTAGPSPRP KMNPRASRRV SSNMDSEKSE QQNAKSRRSS DHYGHVLDSS DNQVEFFVNS 0201: SGRSDGEADD DDDYQSDFAQ SYAQGNDYYG AINLDEVDHI YGSHEAHDVG VKIEPNISGF PPDQDLDSLN TETIDKTRQQ ENGWNDVKEG SPPCEESFEP 0301: EVVDFESDGL LWLPPEPENE EDEREAVLSD DDGDEGDRGD WGYLRPSNSF NEKDFHSKDK SSGAMKNVVE GHFRALVAQL LEVDNLPMVN EGDEEGWLDI 0401: ITSLSWEAAT LLKPDTSKSG GMDPGGYVKV KCIPCGRRSE SMVVKGVVCK KNVAHRRMTS KIEKPRLLIL GGALEYQRIS NQLSSFDTLL QQEMDHLKMA 0501: VAKIDSHNPD ILLVEKSVSR FAQEYLLAKD ISLVLNIKRS LLERISRCTG AQIVPSIDQL TSPKLGYCDL FHVEKFVETH VSPCQVAKKM AKTLMFFDGC 0601: PKPLGCTILL KGAHEDELKK VKHVIQYGVF AAYHLALETS FLADEGASIH ELPLQTPITV ALPDKPSMVN RSISTIPGFT VSSAEKSPTT ELRGEPHKAN 0701: GDLTGNFTSS KTHFQGKLDG NDRIDPSERL LHNLDTVYCK PPETITSKDD GLVPTLESRQ LSFHVEEPSV QKDQWSVLSG ATEQVTDGGY TNDSAVIGNQ 0801: NFNRQEQMES SKGDFHPSAS DHQSILVSLS TRCVWKGSVC ERAHLLRIKY YGSFDKPLGR FLRDNLFDQD QCCPSCTMPA EAHIHCYTHR QGSLTISVKK 0901: LPELLPGQRE GKIWMWHRCL KCPRINGFPP ATRRIVMSDA AWGLSFGKFL ELSFSNHAAA SRVANCGHSL HRDCLRFYGF GRMVACFRYA SINIYAVTLP 1001: PAKLYFNYEN QEWLQKESKE VIKKAEVLFN EVQEALSQIS AKTMGAGSKG STPNKIKLSL EELAGLLEQR KKEYKQMLNV VKDGQPTIDI LLINKLRRLI 1101: IFDSYAWDEC LAGAANMVRN NYLEAPKNSA PKVMGRNVSL EKLSDEKVKS IPTHVAICND SLLQDADYET CLNQGKSFAD TSGKFAIPED VGSDRPPDCR 1201: MEFDPSEGGK DNFVESSQVV KPAHTESQFQ ATDLSDTLDA AWIGEQTTSE NGIFRPPSRA ASTNGTQIPD LRLLGSESEL NFKGGPTNDE HTTQVQLPSP 1301: SFYYSLNKNY SLNSRKHIMA EDRPVYVSSY RELEWRSGAR LLLPLGCNDL VLPVYDDEPT SIIAYALTSS EYKAQMSGSD KSRDRLDSGG SFSLFDSVNL 1401: LSLNSLSDLS VDMSRSLSSA DEQVSQLLHS SLYLKDLHAR ISFTDEGPPG KVKYSVTCYY AKEFEALRMI CCPSETDFIR SLGRCRKWGA QGGKSNVFFA 1501: KSLDDRFIIK QVTKTELESF IKFGPAYFKY LTESISTKSP TSLAKILGIY QVSSKHLKGG KEFKMDVLVM ENLLFKRNFT RLYDLKGSTR ARYNPDTSGS 1601: NTVLLDQNLV EAMPTSPIFV GSKAKRLLER AVWNDTSFLA SIHVMDYSLL VGVDEERNEL VLGIIDFMRQ YTWDKHLETW VKTSGLLGGP KNSTPTVISP 1701: QQYKKRFRKA MTAYFLMVPD QWSPAAVVPS NSSSAEVKEE EEKDNPQAVG NKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)