AT4G03090.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sequence-specific DNA binding;sequence-specific DNA binding transcription factors | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
sequence-specific DNA binding;sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:1366495..1370910 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97563.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.60 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||
| Length | 879 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVQAVNALHW RNSVEFHKLL KDNGDFSICF NSEQVLPQKI SVEKMVKMLP RHLIAVVMTP NKDGKSRYIL CGIRLLQTLC DLTPRNAKLE QVLLDDVKLS 101: AQMIDLVILV IIALGRNRKE SCNSNKESLL EATLVASCLH LFHGFISPNS QDLVLVLLAH PRVDVFIDSA FGAVLNVVIS LKAKLLYRQT DSPKKLGASS 201: VEEVNFHCQQ AEAALQFLHS LCQHKPFRER VAKNKELCGK GGVLRLAQSI LSLTITPEFV GATVTIASTS RMKAKVLSIL QHLFEAESVS FLDEVANAGN 301: LHLAKTVASE VLKLLRLGLS KASMATASPD YPMGFVLLNA MRLADVLTDD SNFRSFFTEH FSMVLSAVFC LSHGDFLSML CSSDLSSRED DANVDYDLFK 401: SAGWILSVFS SSGQSVTPQF KLSLQNNLTM SSYAHQRTSL FIKMIANLHC FVPNVCQEQD RNRFIQNVMS GLRKDPSSIL IKMLPGSSYT PVAQRGTGVC 501: RNLGSLLRHA ESLIPSSLNE EDFLLLRVFC DQLQPLIHSE FEESQVQVKD IEGRGGNLSG KLKELLNLNN EEASEDCDVR VEGVMTKQGV NEEIDTVERL 601: KESDADASNL ETSGSDTSSN RGKGLVEEGE LVQNMSKRFK GSASGEVKED EKSETFLVFE KQKKKRKRSI MNADQMGMIE KALAEEPDLQ RNSASRQLWA 701: DKISQKGSEV ITSSQLKNWL NNRKAKLARA NKQTGPAHDN NSSGDLPESP GDENTWQQKP STPIKDQTVT ETPKTGENLM RTSSSSEEGI KQGQQVRLMD 801: ERGDEIGKGT VLRTDGEWNG LSLETRQICV VDVMELSESY DGSKKMIPYG SDDVGRTFTE ANSRFGVMRV AWDVNKLQY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)