AT5G19310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeotic gene regulator | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Homeotic gene regulator; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1); Has 29243 Blast hits to 22828 proteins in 2261 species: Archae - 168; Bacteria - 6495; Metazoa - 7843; Fungi - 5018; Plants - 2070; Viruses - 244; Other Eukaryotes - 7405 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6498906..6503432 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 122893.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.89 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1064 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVKQLQEQEE NDPVEKTKSL ISALNYLSRD LLLPSHLYAS VSSIYHASVS DLSPSPPLRG NSYTPNRGDL MSEFEDALLQ QRLNYESGSR LAELKETRYK 0101: NRIHNRLSQL EGLPSNRGED LQEKCLLELY GLKLQELQCR VRGEVSAEYW LRLNCADPER QLYDWGMMRL PRRMYGVGDS FVMEADDQFR NKRDAERLLR 0201: LEEEEKNLIE TTQRKFFAEV LNAVREFQLQ IQASHRRCKQ RNDGVQAWHG KQRQRATRAE KLRIMALKSD DQEEYMKLAK ESKNEKLTLF LEETNKIFVS 0301: LGAAVQRQKD AKLSENTKLL KGSESDLSDV DAPEDVLPAQ DIEIIDSDNN DDSNDLLEGE RQFNLAIHSI QEKVTKQPSL LQGGELRSYQ LEGLQWMVSL 0401: YNNDYNGILA DEMGLGKTIQ TIALIAYLLE SKDLHGPHLI LAPKAVLPNW ENEFALWAPS ISAFLYDGSK EKRTEIRARI AGGKFNVLIT HYDLIMRDKA 0501: FLKKIDWNYM IVDEGHRLKN HECALAKTLG TGYRIKRRLL LTGTPIQNSL QELWSLLNFL LPHIFNSIHN FEEWFNTPFA ECGSASLTDE EELLIINRLH 0601: HVIRPFLLRR KKSEVEKFLP GKTQVILKCD MSAWQKLYYK QVTDVGRVGL HSGNGKSKSL QNLTMQLRKC CNHPYLFVGA DYNMCKKPEI VRASGKFELL 0701: DRLLPKLKKA GHRILLFSQM TRLIDLLEIY LSLNDYMYLR LDGSTKTDQR GILLKQFNEP DSPYFMFLLS TRAGGLGLNL QTADTIIIFD SDWNPQMDQQ 0801: AEDRAHRIGQ KKEVRVFVLV SIGSIEEVIL ERAKQKMGID AKVIQAGLFN TTSTAQDRRE MLEEIMSKGT SSLGEDVPSE REINRLAART EEEFWMFEQM 0901: DEERRKKENY KTRLMEEKEV PEWAYTSETQ EDKTNAKNHF GSLTGKRKRK EAVYSDSLSD LQWMKAMESE DEDASKVSQK RKRTDTKTRM SNGSKAEAVL 1001: SESDEEKEEE EEERKEESGK ESEEENEKPL HSWKTNKKKR SRYPVMTSSP NSRGKGSSKG SKRN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)