AT3G54280.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN: helicase activity, binding, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), DEAD-like helicase, N-terminal (InterPro:IPR014001), Armadillo-type fold (InterPro:IPR016024), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20092361..20104153 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 236604.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.52 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2129 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAQQQSSRLN RLLTLLDTGS TQATRLTAAK QIGDIAKSHP QDLSSLLRKV LHHLRSKKWD TRVAAAHAIG AIVLNVKHPS LSELLNSLAT KLGEAGISDN 0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ AFITKNILCQ LQPVKLFPTV SLFDLKKFYG LEYDILNDNS KNPRDRVARQ KKNLRRRLGL 0201: DMCEQFMDVN EMIRDEDLIE QKSNVPANGV GNRLYANCSP HHIQQFVSRM VPRVNSRRPS ARELNLLKRK AKISSKDQAK GSCEVADVEM SSSHVASTSK 0301: RILSDSLDSS KADIGNEDDI EPDGDGKWPF HSFVEQLILD MFDPAWEIRH GSVMALREIL MLHGGSAGVS TEEFSSDNGF ELKDVLNKVT REREIDLNMQ 0401: VSENELEPLR KRPKIEDPSK SFIDNTVLEV IGGDYDINVK DEDAEFLLPP VKVNGQTDCS STKLEPQSSM DDSTSHSEIN HVAEVNNHFE DKSFIEEPVI 0501: PKQQEENLEV LDLVKQARHS WIKNFEFLQD CTIRFLCVLS LDRFGDYISD QVVAPVREAC AQALGATFKY MNPSLIYETL NILLQMQRRP EWEIRHGSLL 0601: GIKYLVAVRQ EMLQDLLGYI LPACKAGLED SDDDVRAVAA DALIPAAAAI VSLRGQTLLS IVMLLWDILL ELDDLSPSTS SIMNLLAEIY SQDDMTLVMH 0701: EELSLGEEQN IELNEMGHIE SIGERRDVKE SPYALSGLAP RLWPFTRHDI TSVRFSAIRT LERLLEAGCR KNISGQSKSS FWPSSILGDT LRIVFQNLLL 0801: ESTEEILECS ERVWRLLVQC PVDDLEDTAK FYMASWIELA ATPYGSTLDA TKMFWPVAPP RKSHFKAAAK MKAVKLENEA SSILGFDYAR SSASLEKQED 0901: ASARSTKIIV GSDMEMSVTR TRVVTASALG IFASRLREGS MQFVVDPLSS TLTSMSGVQR QVGSIVLISW FRETKCKAPS DGSGSLPGFP SPLKKWLLDL 1001: LACADPAFPT KDIFLPYAEL SRTYTKMRNE ASQLLHTVET CHCFDKLLST NKLNVESVTA DETIDFASTL DLWNKESAGN ESLEKQVFED VESSRQQLLS 1101: TAGYLKCVQS NLHITVTSLV AAAVVWMSEF PARLNPIILP LMASIKREQE QILQQIAAEA LAELIAYCVD RKPSPNDKLI KNICSLTCMD PSETPQASII 1201: SSMDIVDDMD FLSSRSNTGK QKAKVVLASG EDRSKVEGFI TRRGSELALK HLSLKFGGSL FDKLPKLWEC LTEVLVPEIP SDQQKIDLKI ESISDPQVLI 1301: NNIQVVRSIA PVMEETLKPR LLSLLPCIFK CVRHSHVAVR LAASRCVMTM AKSMTTDVMA AVVESAIPML GDLTCISGRQ GAGMLIGLLV QGLGVELVPY 1401: SPLLVVPLLR CMSDVDSSVR QSVTRSFAAL VPMLPLARGV PPPVGLSKDL SSNAEDAKFL EQLLDNSHID DYKLCTELKV QLRRYQQEGI NWLGFLKRFK 1501: LHGILCDDMG LGKTLQASAI VASDAAERRG STDELDVFPS IIVCPSTLVG HWAFEIEKYI DLSLLSVLQY VGSAQDRVSL REQFNNHNVI ITSYDVVRKD 1601: VDYLTQFSWN YCILDEGHII KNAKSKITAA VKQLKAQHRL ILSGTPIQNN IMELWSLFDF LMPGFLGTER QFQASYGKPL LAARDPKCSA KDAEAGVLAM 1701: EALHKQVMPF LLRRTKEEVL SDLPEKIIQD RYCDLSPVQL KLYEQFSGSS AKQEISSIIK VDGSADSGNA DVAPTKASTH VFQALQYLLK LCSHPLLVLG 1801: DKVTEPVASD LAAMINGCSD IITELHKVQH SPKLVALQEI LEECGIGSDA SSSDGTLSVG QHRVLIFAQH KALLDIIEKD LFQAHMKSVT YMRLDGSVVP 1901: EKRFEIVKAF NSDPTIDVLL LTTHVGGLGL NLTSADTLVF MEHDWNPMRD HQAMDRAHRL GQKRVVNVHR LIMRGTLEEK VMSLQKFKVS VANTVINAEN 2001: ASMKTMNTDQ LLDLFASAET SKKGGGSSKK GSEDNDQIAG TGKGMKAILG NLEELWDQSQ YTEEYNLSQF LTKLNGGENE KREVDDIGVV SFGNTTGLMF 2101: VTAEVVFVVD SESCKYAFNQ LFLFCFSFF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)